miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 57 tgtgaagtgtttgggggaactcttgatgtcac 88
||||||||||||||||||||||||||||||||
Sbjct: 56 tgtgaagtgtttgggggaactcttgatgtcac 87
>RF00451;mir-395;ABXC01004559.1/91372-91477 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 55 attgtgaagtgtttgggggaactcttgatgtca 87
||||||||||| |||||||||||||||||||||
Sbjct: 73 attgtgaagtgcttgggggaactcttgatgtca 105
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 gctattgtgaagtgtttgggggaactct 79
||||||||||||||||||||||||||||
Sbjct: 76 gctattgtgaagtgtttgggggaactct 103
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 ttgtgaagtgtttgggggaactcttg 81
||||||||||||||||||||||||||
Sbjct: 59 ttgtgaagtgtttgggggaactcttg 84
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 ttgtgaagtgtttgggggaactcttg 81
||||||||||||||||||||||||||
Sbjct: 53 ttgtgaagtgtttgggggaactcttg 78
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 ttgtgaagtgtttgggggaactcttg 81
||||||||||||||||||||||||||
Sbjct: 82 ttgtgaagtgtttgggggaactcttg 107
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttgatgtca 87
||||||||||||||||||||||| |||||
Sbjct: 50 tgaagtgtttgggggaactcttggtgtca 78
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttgatgtca 87
|||||||||||||||||||||||| ||||
Sbjct: 50 tgaagtgtttgggggaactcttgaagtca 78
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttgatgtca 87
||||||||||||||||||||||| |||||
Sbjct: 57 tgaagtgtttgggggaactcttggtgtca 85
>RF00451;mir-395;ABXC01004440.1/121171-121082 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 56 ttgtgaagtgtttgggggaactcttgatgtcac 88
|||||||||||||||||||||| ||| ||||||
Sbjct: 58 ttgtgaagtgtttgggggaacttttggtgtcac 90
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 tgtgaagtgtttgggggaactcttg 81
|||||||||||||||||||||||||
Sbjct: 72 tgtgaagtgtttgggggaactcttg 96
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 ttgtgaagtgtttgggggaactctt 80
|||||||||||||||||||||||||
Sbjct: 54 ttgtgaagtgtttgggggaactctt 78
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 tgtgaagtgtttgggggaactcttg 81
|||||||||||||||||||||||||
Sbjct: 68 tgtgaagtgtttgggggaactcttg 92
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 gctattgtgaagtgtttgggggaactct 79
|||| |||||||||||||||||||||||
Sbjct: 76 gctactgtgaagtgtttgggggaactct 103
>RF00451;mir-395;AP008210.1/31838919-31838832 39947:Oryza sativa
Japonica Group
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 57 tgtgaagtgtttgggggaactcttgatgtcac 88
||||||||||||||||||||||| ||| ||||
Sbjct: 57 tgtgaagtgtttgggggaactctcgatatcac 88
>RF00451;mir-395;AAAA02014816.1/37749-37836 39946:Oryza sativa
Indica Group
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 57 tgtgaagtgtttgggggaactcttgatgtcac 88
|||||||| |||||||||||||| ||||||||
Sbjct: 57 tgtgaagtatttgggggaactctcgatgtcac 88
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 ttgtgaagtgtttgggggaactct 79
||||||||||||||||||||||||
Sbjct: 54 ttgtgaagtgtttgggggaactct 77
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttg 81
|||||||||||||||||||||||
Sbjct: 91 tgaagtgtttgggggaactcttg 113
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttg 81
|||||||||||||||||||||||
Sbjct: 86 tgaagtgtttgggggaactcttg 108
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttg 81
|||||||||||||||||||||||
Sbjct: 92 tgaagtgtttgggggaactcttg 114
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttg 81
|||||||||||||||||||||||
Sbjct: 87 tgaagtgtttgggggaactcttg 109
>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttg 81
|||||||||||||||||||||||
Sbjct: 54 tgaagtgtttgggggaactcttg 76
>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttg 81
|||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttg 96
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttg 81
|||||||||||||||||||||||
Sbjct: 67 tgaagtgtttgggggaactcttg 89
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttg 81
|||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactcttg 84
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tgtgaagtgtttgggggaactct 79
|||||||||||||||||||||||
Sbjct: 78 tgtgaagtgtttgggggaactct 100
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttg 81
|||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttg 96
>RF00451;mir-395;AACV01010557.1/49631-49718 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tgtgaagtgtttgggggaactct 79
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tgtgaagtgtttgggggaactct 79
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 gtgaagtgtttgggggaactctt 80
|||||||||||||||||||||||
Sbjct: 56 gtgaagtgtttgggggaactctt 78
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 59 tgaagtgtttgggggaactcttgatgtcac 88
|||||||||||||||||||| || ||||||
Sbjct: 70 tgaagtgtttgggggaactcctggtgtcac 99
>RF00451;mir-395;ABXC01004449.1/8869-8999 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 gtgaagtgtttgggggaactct 79
||||||||||||||||||||||
Sbjct: 101 gtgaagtgtttgggggaactct 122
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 gtgaagtgtttgggggaactct 79
||||||||||||||||||||||
Sbjct: 89 gtgaagtgtttgggggaactct 110
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 gtgaagtgtttgggggaactct 79
||||||||||||||||||||||
Sbjct: 82 gtgaagtgtttgggggaactct 103
