miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>54645_sof-miR396:pmrd
          Length = 134

 Score = 65.9 bits (33), Expect = 8e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 99  gcagttcaataaagctgtgggaaatttcagagagaggccaa 139
           |||||||||||||||||||||||| | ||||||||||||||
Sbjct: 94  gcagttcaataaagctgtgggaaactgcagagagaggccaa 134



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 15 atggccctctctgtgatcttccacagctttcttgaactgc 54
          |||||| ||| |||||||||||||||||||||||||||||
Sbjct: 3  atggccttctttgtgatcttccacagctttcttgaactgc 42




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 65.9 bits (33), Expect = 8e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 99  gcagttcaataaagctgtgggaaatttcagagagaggccaa 139
           |||||||||||||||||||||||| | ||||||||||||||
Sbjct: 88  gcagttcaataaagctgtgggaaactgcagagagaggccaa 128



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 15 atggccctctctgtgatcttccacagctttcttgaactgc 54
          |||||| ||| |||||||||||||||||||||||||||||
Sbjct: 3  atggccttctttgtgatcttccacagctttcttgaactgc 42




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 65.9 bits (33), Expect = 8e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 98  ggcagttcaataaagctgtgggaaatttcagagagag 134
           ||||||||||||||||||||||||||| |||||||||
Sbjct: 84  ggcagttcaataaagctgtgggaaattgcagagagag 120



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 tcttccacagctttcttgaactgc 54
          ||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgc 42




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 15 atggccctctctgtgatcttccacagctttcttgaactgc 54
          |||||| ||| |||||||||||||||||||||||||||||
Sbjct: 3  atggccttctttgtgatcttccacagctttcttgaactgc 42



 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 99  gcagttcaataaagctgtgggaaatttcagagagaggcca 138
           |||||||||||||||||||||||| | |||||||||||||
Sbjct: 96  gcagttcaataaagctgtgggaaactgcagagagaggcca 135




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 99  gcagttcaataaagctgtgggaaatttcagagagaggcca 138
           |||||||||||||||||||||||| | |||||||||||||
Sbjct: 97  gcagttcaataaagctgtgggaaactgcagagagaggcca 136



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 tcttccacagctttcttgaactgc 54
          ||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgc 42




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 87  ttgcacgagagggcagttcaataaagctgtgggaaatttcagag 130
           ||||||||| | |||||||||||||||||||||||||| |||||
Sbjct: 73  ttgcacgagtgtgcagttcaataaagctgtgggaaattacagag 116



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 26 tgtgatcttccacagctttcttgaactgc 54
          |||| ||||||||||||||||||||||||
Sbjct: 4  tgtggtcttccacagctttcttgaactgc 32




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 94  agagggcagttcaataaagctgtgggaaat 123
           ||||||||||||||||||||||||||||||
Sbjct: 87  agagggcagttcaataaagctgtgggaaat 116



 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 30 atcttccacagctttcttgaactgc 54
          |||||||||||||||||||||||||
Sbjct: 1  atcttccacagctttcttgaactgc 25




>54870_vvi-miR396c:pmrd
          Length = 108

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 24 tctgtgatcttccacagctttcttgaactg 53
          ||||||||||||||||||||||||||||||
Sbjct: 2  tctgtgatcttccacagctttcttgaactg 31




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 93  gagagggcagttcaataaagctgtgggaaatttcagag 130
           ||||| |||||||||||||||||||||||||| |||||
Sbjct: 117 gagagagcagttcaataaagctgtgggaaattgcagag 154



 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 26 tgtgatcttccacagctttcttgaactgc 54
          |||||||||||||||||||||||||||||
Sbjct: 4  tgtgatcttccacagctttcttgaactgc 32




>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 56.0 bits (28), Expect = 8e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 19 ccctctctgtgatcttccacagctttcttgaactgc 54
          ||||||||||  ||||||||||||||||||||||||
Sbjct: 4  ccctctctgtattcttccacagctttcttgaactgc 39



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 gttcaataaagctgtgggaa 121
           ||||||||||||||||||||
Sbjct: 130 gttcaataaagctgtgggaa 149




>48578_gma-miR396a:pmrd
          Length = 140

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                   
Query: 14 catggccctctctgtgatcttccacagctttcttgaactgc 54
          |||||| |||| |||  ||||||||||||||||||||||||
Sbjct: 2  catggctctctttgtattcttccacagctttcttgaactgc 42



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 gttcaataaagctgtgggaa 121
           ||||||||||||||||||||
Sbjct: 103 gttcaataaagctgtgggaa 122




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 tcttccacagctttcttgaactgc 54
          ||||||||||||||||||||||||
Sbjct: 2  tcttccacagctttcttgaactgc 25



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 99  gcagttcaataaagctgtgggaaa 122
           ||||||||||||||||||||||||
Sbjct: 80  gcagttcaataaagctgtgggaaa 103




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 tcttccacagctttcttgaactgc 54
          ||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgc 32



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 gttcaataaagctgtgggaa 121
           ||||||||||||||||||||
Sbjct: 90  gttcaataaagctgtgggaa 109




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 tcttccacagctttcttgaactgc 54
          ||||||||||||||||||||||||
Sbjct: 7  tcttccacagctttcttgaactgc 30



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 gttcaataaagctgtgggaa 121
           ||||||||||||||||||||
Sbjct: 104 gttcaataaagctgtgggaa 123




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 tcttccacagctttcttgaactgc 54
          ||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgc 32



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 gttcaataaagctgtgggaa 121
           ||||||||||||||||||||
Sbjct: 106 gttcaataaagctgtgggaa 125




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 tcttccacagctttcttgaactgc 54
          ||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgc 32



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 gttcaataaagctgtgggaa 121
           ||||||||||||||||||||
Sbjct: 97  gttcaataaagctgtgggaa 116




>48680_lja-miR396:pmrd
          Length = 108

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 tcttccacagctttcttgaactgc 54
          ||||||||||||||||||||||||
Sbjct: 14 tcttccacagctttcttgaactgc 37



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 gttcaataaagctgtgggaa 121
           ||||||||||||||||||||
Sbjct: 76  gttcaataaagctgtgggaa 95




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 31 tcttccacagctttcttgaactgc 54
          ||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgc 32



 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 102 gttcaataaagctgtgggaa 121
           ||||||||||||||||||||
Sbjct: 123 gttcaataaagctgtgggaa 142




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 33 ttccacagctttcttgaactgc 54
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgc 22



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 99  gcagttcaataaagctgtggga 120
           ||||||||||||||||||||||
Sbjct: 76  gcagttcaataaagctgtggga 97




>55082_zma-miR396k:pmrd
          Length = 98

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 33 ttccacagctttcttgaactgc 54
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgc 22



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 99  gcagttcaataaagctgtggga 120
           ||||||||||||||||||||||
Sbjct: 77  gcagttcaataaagctgtggga 98




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 33 ttccacagctttcttgaactgc 54
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgc 22



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 99  gcagttcaataaagctgtggga 120
           ||||||||||||||||||||||
Sbjct: 77  gcagttcaataaagctgtggga 98




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 33 ttccacagctttcttgaactgc 54
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgc 22




>48508_ghr-miR396c:pmrd
          Length = 115

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 33 ttccacagctttcttgaactgc 54
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgc 22




>48507_ghr-miR396b:pmrd
          Length = 115

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 33 ttccacagctttcttgaactgc 54
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgc 22




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 33  ttccacagctttcttgaactgc 54
           ||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgc 80




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 33 ttccacagctttcttgaactgc 54
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgc 22



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 102 gttcaataaagctgtgggaaa 122
           |||||||||||||||||||||
Sbjct: 102 gttcaataaagctgtgggaaa 122




>55078_zma-miR396g:pmrd
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 3  ttccacagctttcttgaact 22




>55077_zma-miR396f:pmrd
          Length = 166

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 3  ttccacagctttcttgaact 22




>54869_vvi-miR396b:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>54868_vvi-miR396a:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33




>54487_sbi-miR396c:pmrd
          Length = 162

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>53179_ptc-miRf11357-akr:pmrd
          Length = 141

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 33  ttccacagctttcttgaact 52
           ||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115




>52893_ptc-miRf11071-akr:pmrd
          Length = 148

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 33  ttccacagctttcttgaact 52
           ||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123




>52304_ptc-miRf10482-akr:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74




>52080_ptc-miRf10258-akr:pmrd
          Length = 141

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 33  ttccacagctttcttgaact 52
           ||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115




>51738_ptc-miR396e:pmrd
          Length = 145

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51737_ptc-miR396d:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51736_ptc-miR396c:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51564_pta-miR396:pmrd
          Length = 119

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36




>48947_osa-miR396c:pmrd
          Length = 141

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48748_mtr-miR396a:pmrd
          Length = 93

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25




>48580_gma-miR396c:pmrd
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48579_gma-miR396b:pmrd
          Length = 126

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48374_bna-miR396a:pmrd
          Length = 117

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>47009_ath-miR396b:pmrd
          Length = 135

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>46888_aqc-miR396b:pmrd
          Length = 89

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 33 ttccacagctttcttgaact 52
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20