miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48329_bdi-miR2504c:pmrd
Length = 99
Score = 81.8 bits (41), Expect = 2e-16
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 121 aataaaactaatttagagttgtagatgttggtatatttttctataaacttggtcaaa 177
|||||||||||||||||||| | |||||||||| ||||||| |||||||||||||||
Sbjct: 65 aataaaactaatttagagttatcgatgttggtagatttttcaataaacttggtcaaa 9
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 151 gtatatttttctataaacttggtcaaa 177
||||||| |||||||||||||||||||
Sbjct: 66 gtatattcttctataaacttggtcaaa 92
>54500_sbi-miR437b:pmrd
Length = 171
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 143 agatgttggtatatttttctataaacttggtcaaa 177
|||||||||| |||||||||||||||||||||||
Sbjct: 119 agatgttggtgcatttttctataaacttggtcaaa 153
>54514_sbi-miR437r:pmrd
Length = 180
Score = 50.1 bits (25), Expect = 7e-07
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 121 aataaaactaatttagagttgtagatgttggtatatttttctataaacttggtcaaa 177
|||||||||||||| |||||| || || ||| ||||||||||| |||||||||||
Sbjct: 74 aataaaactaatttgatgttgtaaatattagtacatttttctatagacttggtcaaa 18
>54503_sbi-miR437f:pmrd
Length = 174
Score = 50.1 bits (25), Expect = 7e-07
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 115 ggatttaataaaactaatttagagttgtagatgttggtatatttttctataaacttggtc 174
||||||||| |||||||||| ||||| ||| ||||| | ||||||||||||||||||
Sbjct: 95 ggatttaatgaaactaattt---gttgttgatcttggtgcacttttctataaacttggtc 151
Query: 175 aaa 177
|||
Sbjct: 152 aaa 154
>55111_zma-miR437e:pmrd
Length = 182
Score = 48.1 bits (24), Expect = 3e-06
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 153 atatttttctataaacttggtcaaatttaaa-aagtttga 191
|||||||||||||||||||||| || ||||| ||||||||
Sbjct: 138 atatttttctataaacttggtcgaagttaaagaagtttga 177
>54504_sbi-miR437g:pmrd
Length = 176
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 138 gttgtagatgttggtatatttttctataaacttggtcaaa 177
||||||||||||| | | |||||||||||||||||||||
Sbjct: 117 gttgtagatgttgatgcaattttctataaacttggtcaaa 156
>54518_sbi-miR437v:pmrd
Length = 114
Score = 46.1 bits (23), Expect = 1e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 139 ttgtagatgttggtatatttttctataaacttggtcaaa 177
|||||||||||| | |||||||||||||||||| ||||
Sbjct: 58 ttgtagatgttgatgcatttttctataaacttggacaaa 96
>54516_sbi-miR437t:pmrd
Length = 170
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 155 atttttctataaacttggtcaaa 177
|||||||||||||||||||||||
Sbjct: 130 atttttctataaacttggtcaaa 152
>54507_sbi-miR437k:pmrd
Length = 172
Score = 46.1 bits (23), Expect = 1e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 139 ttgtagatgttggtatatttttctataaacttggtcaaa 177
||||||| |||| ||||||||||| |||||||||||||
Sbjct: 114 ttgtagaagttgacatatttttctaaaaacttggtcaaa 152
Score = 40.1 bits (20), Expect = 7e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 146 tgttggtatatttttctataaacttggtcaaa 177
||||||| ||||||||||||| |||||||||
Sbjct: 50 tgttggtgtatttttctataagtttggtcaaa 19
>48988_osa-miR437:pmrd
Length = 213
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 155 atttttctataaacttggtcaaa 177
|||||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaa 157
>48987_osa-miR437:pmrd
Length = 213
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 155 atttttctataaacttggtcaaa 177
|||||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaa 157
>48986_osa-miR437:pmrd
Length = 213
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 155 atttttctataaacttggtcaaa 177
|||||||||||||||||||||||
Sbjct: 135 atttttctataaacttggtcaaa 157
>48328_bdi-miR2504b:pmrd
Length = 128
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 155 atttttctataaacttggtcaaa 177
|||||||||||||||||||||||
Sbjct: 41 atttttctataaacttggtcaaa 19
>55112_zma-miR437f:pmrd
Length = 342
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 156 tttttctataaacttggtcaaa 177
||||||||||||||||||||||
Sbjct: 41 tttttctataaacttggtcaaa 20
>55107_zma-miR437a:pmrd
Length = 342
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 156 tttttctataaacttggtcaaa 177
||||||||||||||||||||||
Sbjct: 302 tttttctataaacttggtcaaa 323
>54510_sbi-miR437n:pmrd
Length = 182
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 144 gatgttggtatatttttctataaacttggt 173
|||||| ||||||||||||| |||||||||
Sbjct: 129 gatgttagtatatttttctacaaacttggt 158
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 157 ttttctataaacttggtcaaa 177
|||||||||||||||||||||
Sbjct: 39 ttttctataaacttggtcaaa 19
>48327_bdi-miR2504a:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 4e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 139 ttgtagatgttggtatatttttctataaacttggtcaaattt 180
||||| |||||| ||| |||| |||||| |||||||||||||
Sbjct: 52 ttgtatatgttgatatgttttgctataagcttggtcaaattt 11
>55109_zma-miR437c:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 157 ttttctataaacttggtcaaa 177
|||||||||||||||||||||
Sbjct: 37 ttttctataaacttggtcaaa 17
>55108_zma-miR437b:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 157 ttttctataaacttggtcaaa 177
|||||||||||||||||||||
Sbjct: 40 ttttctataaacttggtcaaa 20
>54526_sbi-miR1435a:pmrd
Length = 287
Score = 42.1 bits (21), Expect = 2e-04
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 113 gaggatttaataaaactaatttagagttgtagatgttggtatatttttctataaacttgg 172
||||||||||| |||| || || ||||||||||||| | || ||||| |||||||||
Sbjct: 162 gaggatttaatgaaacaaacttgatgttgtagatgttgatgcatctttctgtaaacttgg 221
Query: 173 tcaaa 177
|||||
Sbjct: 222 tcaaa 226
>54517_sbi-miR437u:pmrd
Length = 164
Score = 42.1 bits (21), Expect = 2e-04
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 117 atttaataaaactaatttagagttgtagatgttggtatatttttctataaacttggt 173
||||||| |||||||||| || ||||| |||| ||||||||||||||||||||
Sbjct: 86 atttaatgaaactaatttgatgtcatagatattggcgtatttttctataaacttggt 142
>54508_sbi-miR437l:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 51/60 (85%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 117 atttaataaaactaatttagagttgtagatgttggtatatttttctataaacttggtcaa 176
||||||| |||||||||| | ||||| ||||||| ||||||||||||| ||||||||
Sbjct: 75 atttaattaaactaatttggtgttgtc--tgttggtgcatttttctataaatttggtcaa 18
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 141 gtagatgttggtatatttttctataaacttggtcaaa 177
||||||||| |||||||||||| |||||||| ||||
Sbjct: 116 gtagatgttaatatatttttctaaaaacttggccaaa 152
>54506_sbi-miR437j:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 157 ttttctataaacttggtcaaa 177
|||||||||||||||||||||
Sbjct: 37 ttttctataaacttggtcaaa 17
>54651_sof-miR437:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 7e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 142 tagatgttggtatatttttctataaacttggtcaaa 177
||||| ||||| ||||||||||||||||| |||||
Sbjct: 55 tagattttggtgcatttttctataaacttgatcaaa 20
>51322_pci-miR437:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 158 tttctataaacttggtcaaa 177
||||||||||||||||||||
Sbjct: 78 tttctataaacttggtcaaa 59
