miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 67.9 bits (34), Expect = 4e-11
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 72 atacattcatatttgaacaaatttaagtcacttaatatgggacgga 117
|||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct: 57 atacatccatatttggacaaatttgagtcacttaatatgggacgga 12
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 71 tatacattcatatttgaacaaatttaagtcacttaatatgggacgga 117
||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct: 58 tatacatccatatctggacaaatttgagtcacttaatatgggacgga 12
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 aagtcacttaatatgggacgga 117
||||||||||||||||||||||
Sbjct: 92 aagtcacttaatatgggacgga 113
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 60.0 bits (30), Expect = 9e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 72 atacattcatatttgaacaaatttaagtcacttaatatgggacgga 117
|||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 69 atacatccatatttggacaaatttgagtcacttaatatgagacgga 114
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 79 catatttgaacaaatttaagtcacttaatatgggacgga 117
||||||| |||||||| |||||||||||||||||||||
Sbjct: 77 catatttagacaaatttgagtcacttaatatgggacgga 115
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 72 atacattcatatttgaacaaatttaagtcacttaatatgggacgga 117
|||||| ||||||||| |||||| ||||||||||||| |||||||
Sbjct: 57 atacatccatatttgattaaatttgagtcacttaatataggacgga 12
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 88 acaaatttaagtcacttaatatgggacgga 117
|||||||| |||||||||||||||||||||
Sbjct: 86 acaaatttgagtcacttaatatgggacgga 115
>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
distachyon
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 88 acaaatttaagtcacttaatatggga 113
||||||||||||||||||||||||||
Sbjct: 86 acaaatttaagtcacttaatatggga 111
>RF00906;MIR1122;EF059989.1/159537-159414 29664:Brachypodium
sylvaticum
Length = 124
Score = 44.1 bits (22), Expect = 6e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 72 atacattcatatttgaacaaatttaagtcacttaatatgggacgga 117
||||| ||||||||| || ||||| | |||||||||||| ||||||
Sbjct: 57 atacaatcatatttggacgaatttgaatcacttaatatgagacgga 12
