miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730894.1/50807-50703 15368:Brachypodium
distachyon
Length = 105
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 12 tagttactgcctccgatccaaaataagtgtctcagttttgaactaagcctagttcaagcc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tagttactgcctccgatccaaaataagtgtctcagttttgaactaagcctagttcaagcc 46
Query: 72 tatttcaaaactgcgacacttattttggatcggaggtagtattaa 116
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 tatttcaaaactgcgacacttattttggatcggaggtagtattaa 1
Score = 73.8 bits (37), Expect = 5e-13
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 16 tactgcctccgatccaaaataagtgtctcagttttgaactaagcctagttcaagcctatt 75
|||| |||||||||||||||||||||| |||||||||| || || | | || || |
Sbjct: 5 tactacctccgatccaaaataagtgtcgcagttttgaaataggcttgaactaggcttagt 64
Query: 76 tcaaaactgcgacacttattttggatcggaggtagta 112
||||||||| |||||||||||||||||||||| ||||
Sbjct: 65 tcaaaactgagacacttattttggatcggaggcagta 101
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 16 tactgcctccgatccaaaataagtgtctcagttttg 51
|||| |||||| ||||||||||||||||||| ||||
Sbjct: 130 tactccctccgttccaaaataagtgtctcagatttg 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 77 caaaactgcgacacttattttggatcggaggtagtatta 115
|||| ||| ||||||||||||||| |||||| |||||||
Sbjct: 95 caaatctgagacacttattttggaacggagggagtatta 133
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 85 cgacacttattttggatcggagg 107
|||||||||||||||||||||||
Sbjct: 32 cgacacttattttggatcggagg 10
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 86 gacacttattttggatcggaggtagta 112
|||||||||||||||||||||| ||||
Sbjct: 64 gacacttattttggatcggagggagta 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 tactgcctccgatccaaaataagtgtc 42
|||| ||||||||||||||||||||||
Sbjct: 90 tactccctccgatccaaaataagtgtc 64
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 cctccgatccaaaataagtgtc 42
||||||||||||||||||||||
Sbjct: 10 cctccgatccaaaataagtgtc 31
>RF00906;MIR1122;EU730898.1/15478-15583 15368:Brachypodium
distachyon
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 16 tactgcctccgatccaaaataagtgtctcag 46
|||| ||||||||||| ||||||||||||||
Sbjct: 102 tactccctccgatccataataagtgtctcag 72
>RF00906;MIR1122;EU730897.1/72285-72181 15368:Brachypodium
distachyon
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 16 tactgcctccgatccaaaataagtgtctcag 46
|||| ||||||||||| ||||||||||||||
Sbjct: 101 tactccctccgatccataataagtgtctcag 71
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 16 tactgcctccgatccaaaataagtgtctca 45
|||| |||||| ||||||||||||||||||
Sbjct: 5 tactccctccgttccaaaataagtgtctca 34
