miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730895.1/11506-11407 15368:Brachypodium
distachyon
Length = 100
Score = 87.7 bits (44), Expect = 4e-17
Identities = 72/80 (90%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 33 gatccataataagtgtcaggaatttagtacaaagttactttgtactaaatccccggcac- 91
||||||||||||||||| || |||||||||||||||| ||| |||||||| |||| |||
Sbjct: 15 gatccataataagtgtctgggatttagtacaaagttattttctactaaattcccgacact 74
Query: 92 ttattatggatcagagggag 111
|||||||||||| |||||||
Sbjct: 75 ttattatggatcggagggag 94
Score = 79.8 bits (40), Expect = 9e-15
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 33 gatccataataa-gtgtcaggaatttagtacaaagttactttgtactaaatccccggcac 91
|||||||||||| ||||| ||||||||||| ||| | ||||||||||||||||| | |||
Sbjct: 86 gatccataataaagtgtcgggaatttagtagaaaataactttgtactaaatcccagacac 27
Query: 92 ttattatggatc 103
||||||||||||
Sbjct: 26 ttattatggatc 15
>RF00906;MIR1122;EU730902.1/34362-34465 15368:Brachypodium
distachyon
Length = 104
Score = 61.9 bits (31), Expect = 2e-09
Identities = 73/86 (84%), Gaps = 7/86 (8%)
Strand = Plus / Minus
Query: 34 atccataataagtgtcaggaatttagtacaaagtt------actttgtactaaatccccg 87
|||||||||||||||||| ||||||||||||||| | |||||||||||| ||||
Sbjct: 89 atccataataagtgtcagagatttagtacaaagttagtacaaatttgtactaaat-cccg 31
Query: 88 gcacttattatggatcagagggagta 113
||||||||||| ||| |||||||||
Sbjct: 30 acacttattatgaatcggagggagta 5
Score = 54.0 bits (27), Expect = 5e-07
Identities = 81/98 (82%), Gaps = 7/98 (7%)
Strand = Plus / Plus
Query: 23 tactccttctgatccataataagtgtcaggaatttagtacaaagtt------actttgta 76
|||||| || ||| ||||||||||||| ||| ||||||||||| || ||||||||
Sbjct: 5 tactccctccgattcataataagtgtcggga-tttagtacaaatttgtactaactttgta 63
Query: 77 ctaaatccccggcacttattatggatcagagggagtaa 114
||||||| | | |||||||||||||| ||||||||||
Sbjct: 64 ctaaatctctgacacttattatggattggagggagtaa 101
>RF00906;MIR1122;EU730902.1/9047-9151 15368:Brachypodium
distachyon
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 23 tactccttctgatccataataagtgtc 49
||||||||| |||||||||||||||||
Sbjct: 5 tactccttccgatccataataagtgtc 31
>RF00906;MIR1122;EF059989.1/239319-239424 29664:Brachypodium
sylvaticum
Length = 106
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 cacttattatggatcagagggagtaa 114
||||||||||||||| ||||||||||
Sbjct: 78 cacttattatggatcggagggagtaa 103
