miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EF059989.1/55128-55252 29664:Brachypodium
sylvaticum
Length = 125
Score = 115 bits (58), Expect = 2e-25
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 30 cctccgattctaaattgttgtcgaaatattttatgtatctatacgttttttaagaatagc 89
|||| ||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||
Sbjct: 10 cctctgatcctaaattgttgtcgaaatattacatgtatctagacgctttttaagaataga 69
Query: 90 tacgtccatatttggacaaatttgagtcaagagtttagaatcagag 135
|| ||||||||||| |||||||||||||||| ||||| |||||||
Sbjct: 70 tatatccatatttgggcaaatttgagtcaagaatttaggatcagag 115
>RF00906;MIR1122;EF059989.1/222136-222013 29664:Brachypodium
sylvaticum
Length = 124
Score = 101 bits (51), Expect = 3e-21
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 30 cctccgattctaaattgttgtcgaaatattttatgtatctatacgttttttaagaatagc 89
|||||||| ||||||| ||||||||||||| ||||||||| ||| ||||||||||||
Sbjct: 10 cctccgatcctaaattattgtcgaaatattacatgtatctagacgcgttttaagaataga 69
Query: 90 tacgtccatatttggacaaatttgagtcaagagtttaga 128
||| ||||||||||| |||||||||| ||||| ||||||
Sbjct: 70 tacatccatatttgggcaaatttgagacaagaatttaga 108
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 73.8 bits (37), Expect = 6e-13
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 62 atgtatctatacgttttttaagaatagctacgtccatatttggacaaatttgagtca 118
||||||||| ||| |||||||| |||| ||| |||||||||||||||||||||||||
Sbjct: 84 atgtatctagacgctttttaagcatagatacatccatatttggacaaatttgagtca 28
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 63.9 bits (32), Expect = 6e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 42 aattgttgtcgaaatattttatgtatctatacgttttttaagaatagctacgtccatatt 101
|||| ||||||||||||| ||||||||| ||| |||||| |||||| ||| |||| ||
Sbjct: 22 aattcttgtcgaaatattacatgtatctagacgctttttaggaatagatacatccaattt 81
Query: 102 tggacaaatttgagtcaaga 121
||| |||||||||| |||||
Sbjct: 82 tgggcaaatttgagacaaga 101
>RF00906;MIR1122;EF059989.1/222260-222384 29664:Brachypodium
sylvaticum
Length = 125
Score = 63.9 bits (32), Expect = 6e-10
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 42 aattgttgtcgaaatattttatgtatctatacgttttttaagaatagctacgtccatatt 101
|||| |||||||||| || ||||||||| |||||||||| ||||| ||| ||||| ||
Sbjct: 104 aattcttgtcgaaatcttacatgtatctagacgttttttatgaatatatacatccatttt 45
Query: 102 tggacaaatttgagtcaaga 121
|||||||||| ||| |||||
Sbjct: 44 tggacaaattcgagccaaga 25
>RF00906;MIR1122;EU730902.1/94507-94383 15368:Brachypodium
distachyon
Length = 125
Score = 60.0 bits (30), Expect = 9e-09
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 42 aattgttgtcgaaatattttatgtatctatacgttttttaagaatagctacgtccatatt 101
|||| ||||||||||||| ||||||||| ||| ||||| |||||| ||| ||||| ||
Sbjct: 104 aattcttgtcgaaatattgcatgtatctaaacgccttttaggaatagatacatccatttt 45
Query: 102 tggacaaatttgag 115
||| ||||||||||
Sbjct: 44 tgggcaaatttgag 31
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 60.0 bits (30), Expect = 9e-09
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 46 gttgtcgaaatattttatgtatctatacgttttttaagaatagctacgtccatatttgga 105
|||||||||||||| ||||||||| ||| |||||| | |||| ||| ||||||| |||
Sbjct: 100 gttgtcgaaatattacatgtatctagacgctttttaggcatagatacatccatatctggg 41
Query: 106 caaatttgag 115
||||||||||
Sbjct: 40 caaatttgag 31
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 48 tgtcgaaatattttatgtatctatacgttttttaagaatagctacgtccatatttggaca 107
|||||||||||| ||||||||| | | |||||| | |||| ||| ||||||||||| ||
Sbjct: 97 tgtcgaaatattacatgtatctagatgctttttaggtatagatacatccatatttgggca 38
Query: 108 aatttgag 115
||||||||
Sbjct: 37 aatttgag 30
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 50 tcgaaatattttatgtatctatacgttttttaaga-atagctacgtccatatttggacaa 108
|||||||||| ||||||||| |||| ||||| | |||| ||||||||| ||| |||||
Sbjct: 30 tcgaaatattacatgtatctagacgtattttagtatatagatacgtccatttttagacaa 89
Query: 109 atttgagtca 118
||||||||||
Sbjct: 90 atttgagtca 99
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 85 atagctacgtccatatttggacaaatttgagtca 118
|||| ||||||||||||| |||||||||||||||
Sbjct: 66 atagatacgtccatatttagacaaatttgagtca 99
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 47 ttgtcgaaatattttatgtatctatacgttttttaagaatagctacgtccatatttgg 104
||||| ||||||| ||||||||| |||||||||| | |||| ||| |||||||||||
Sbjct: 89 ttgtcaaaatattacatgtatctagacgttttttatgcatagatacatccatatttgg 32
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 85 atagctacgtccatatttggacaaatttgagtca 118
|||| ||| |||||||||||||||||||||||||
Sbjct: 65 atagatacatccatatttggacaaatttgagtca 98
>RF00906;MIR1122;EU730901.1/65072-65195 15368:Brachypodium
distachyon
Length = 124
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 47 ttgtcgaaatattttatgtatctatacgttttt 79
||||||||||||| |||||||||| ||||||||
Sbjct: 27 ttgtcgaaatattatatgtatctagacgttttt 59
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 50.1 bits (25), Expect = 9e-06
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 47 ttgtcgaaatattttatgtatctatacgttttttaagaatagctacgtccatatttggac 106
||||| ||||||| ||||||||| ||| |||||| | |||| ||| |||||||||||
Sbjct: 27 ttgtcaaaatattacatgtatctaaacgctttttaggcatagatacatccatatttggga 86
Query: 107 aaatttgag 115
|||||||||
Sbjct: 87 aaatttgag 95
>RF00906;MIR1122;EU730902.1/42384-42258 15368:Brachypodium
distachyon
Length = 127
Score = 46.1 bits (23), Expect = 1e-04
Identities = 68/82 (82%), Gaps = 2/82 (2%)
Strand = Plus / Minus
Query: 42 aattgttgtcgaaatattttatgtatctatac--gttttttaagaatagctacgtccata 99
|||| ||||||||||||| ||||||||| || |||||||| |||||| ||| |||||
Sbjct: 106 aattcttgtcgaaatattacatgtatctagacgtgttttttaggaatagatacatccatt 47
Query: 100 tttggacaaatttgagtcaaga 121
||||| |||||||| |||||
Sbjct: 46 tttgggttaatttgagacaaga 25
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 50 tcgaaatattttatgtatctatacgttttttaagaatagctacgtccatatttggacaaa 109
|||||||||| ||||||||| ||| |||||| | ||| ||| ||||||||||| |||
Sbjct: 96 tcgaaatattacatgtatctaaacgctttttacgcatatatacatccatatttgggcaat 37
Query: 110 tttgagtcaag 120
|||||| ||||
Sbjct: 36 tttgagacaag 26
>RF00906;MIR1122;EU730902.1/55282-55158 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 48 tgtcgaaatattttatgtatctatacgttttttaagaatagctacgtccatatttggaca 107
|||||||||||| ||||||||| ||| ||||| ||||| ||| ||||| |||| ||
Sbjct: 98 tgtcgaaatattacatgtatctagacgcattttagaaatagatacatccatctttgagca 39
Query: 108 aatttgagtcaaga 121
|||||||| |||||
Sbjct: 38 aatttgagacaaga 25
>RF00906;MIR1122;EF059989.1/156495-156619 29664:Brachypodium
sylvaticum
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 47 ttgtcgaaatattttatgtatctatacgttttttaagaatagctacgtccatatttggac 106
||||||||||||| ||||||||| || |||||| |||| ||| | | |||||||||
Sbjct: 27 ttgtcgaaatattacatgtatctagactctttttacacatagatacattcgtatttggac 86
Query: 107 aaatttgagtcaag 120
||||||||| ||||
Sbjct: 87 aaatttgagacaag 100
>RF00906;MIR1122;EF059989.1/52700-52824 29664:Brachypodium
sylvaticum
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 47 ttgtcgaaatattttatgtatctatacgttttttaagaatagctacgtccatatttggac 106
||||||||||||| ||||||||| ||| ||||||| |||| | | | | ||||||| |
Sbjct: 27 ttgtcgaaatattacatgtatctagacgctttttaaacatagatgcattcgtatttgggc 86
Query: 107 aaatttgagtcaag 120
||||||||| ||||
Sbjct: 87 aaatttgagacaag 100
