miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41867_far-MIR156b:mirbase
Length = 180
Score = 194 bits (98), Expect = 1e-50
Identities = 115/120 (95%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 1 tggtcgtggctggcaccgtgggtggtggtatcccatggctgagtacttgacagaagagag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10 tggtcgtggctggcaccgtgggtggtggtatcccatggctgagt---tgacagaagagag 66
Query: 61 agagcacagcttgagtcggcggcgacccctgtgagacacccgcctggagggagctctgga 120
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 agagcacagctggagtcggtggcgacccctgtgagacacccgcctggagggagctctgga 126
>41866_far-MIR156a:mirbase
Length = 180
Score = 194 bits (98), Expect = 1e-50
Identities = 115/120 (95%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 1 tggtcgtggctggcaccgtgggtggtggtatcccatggctgagtacttgacagaagagag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10 tggtcgtggctggcaccgtgggtggtggtatcccatggctgagt---tgacagaagagag 66
Query: 61 agagcacagcttgagtcggcggcgacccctgtgagacacccgcctggagggagctctgga 120
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 agagcacagctggagtcggtggcgacccctgtgagacacccgcctggagggagctctgga 126
>41726_bdi-MIR156:mirbase
Length = 147
Score = 71.9 bits (36), Expect = 1e-13
Identities = 50/54 (92%), Gaps = 3/54 (5%)
Strand = Plus / Plus
Query: 30 atcccatggctgagtacttgacagaagagagagagcacagcttgagtcggcggc 83
||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 86 atcccatggctgagt---tgacagaagagagagagcacagctggagtcggcggc 136
>41204_aqc-MIR529:mirbase
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ttgacagaagagagagagcaca 68
||||||||||||||||||||||
Sbjct: 17 ttgacagaagagagagagcaca 38
>41080_tcc-MIR156a:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ttgacagaagagagagagcaca 68
||||||||||||||||||||||
Sbjct: 20 ttgacagaagagagagagcaca 41
>40430_gma-MIR156f:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ttgacagaagagagagagcaca 68
||||||||||||||||||||||
Sbjct: 11 ttgacagaagagagagagcaca 32
>40426_gma-MIR156b:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ttgacagaagagagagagcaca 68
||||||||||||||||||||||
Sbjct: 20 ttgacagaagagagagagcaca 41
>40396_ahy-MIR156c:mirbase
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ttgacagaagagagagagcaca 68
||||||||||||||||||||||
Sbjct: 21 ttgacagaagagagagagcaca 42
>40393_ahy-MIR156a:mirbase
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ttgacagaagagagagagcaca 68
||||||||||||||||||||||
Sbjct: 17 ttgacagaagagagagagcaca 38
>40334_rco-MIR156e:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ttgacagaagagagagagcaca 68
||||||||||||||||||||||
Sbjct: 5 ttgacagaagagagagagcaca 26
>42687_zma-MIR156j:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgacagaagagagagagcaca 68
|||||||||||||||||||||
Sbjct: 21 tgacagaagagagagagcaca 41
>42488_sbi-MIR156d:mirbase
Length = 125
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgacagaagagagagagcaca 68
|||||||||||||||||||||
Sbjct: 21 tgacagaagagagagagcaca 41
>41914_osa-MIR156k:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgacagaagagagagagcaca 68
|||||||||||||||||||||
Sbjct: 11 tgacagaagagagagagcaca 31
>40648_mtr-MIR156:mirbase
Length = 460
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgacagaagagagagagcaca 68
|||||||||||||||||||||
Sbjct: 21 tgacagaagagagagagcaca 41
>39507_ppt-MIR529e:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 cagaagagagagagcacagc 70
||||||||||||||||||||
Sbjct: 95 cagaagagagagagcacagc 76
>39506_ppt-MIR529d:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 cagaagagagagagcacagc 70
||||||||||||||||||||
Sbjct: 36 cagaagagagagagcacagc 55
>39452_ppt-MIR156a:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 tgacagaagagagagagcacagct 71
||||||||||||| ||||||||||
Sbjct: 21 tgacagaagagagtgagcacagct 44
