miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 56.0 bits (28), Expect = 3e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 139 gatgtatctaaacatattttagttgtagatacatcc 174
|||||||||| ||||||||||||| |||||||||||
Sbjct: 75 gatgtatctagacatattttagttctagatacatcc 40
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 139 gatgtatctaaacatattttagttgtagatacatc 173
|||||||||| ||||||||||||| ||||||||||
Sbjct: 51 gatgtatctagacatattttagttctagatacatc 85
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 185 aaagttgagacacttatttttgtacggagggagta 219
|||||||||||||||||||| | ||||||||||||
Sbjct: 67 aaagttgagacacttattttgggacggagggagta 101
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 189 ttgagacacttatttttgtacggagggagta 219
|||||||||||||||| | ||||||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagta 5
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 52.0 bits (26), Expect = 5e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 116 tgtcttagttttgtctagattcagatgtatctaa 149
|||||||| ||||||||||| |||||||||||||
Sbjct: 108 tgtcttagatttgtctagatacagatgtatctaa 75
Score = 48.1 bits (24), Expect = 7e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 116 tgtcttagttttgtctagattcagatgtatctaaacatattttagttgtagatacatccg 175
|||||||| ||||||||||| | |||||||| | || ||||| || |||||||||| |
Sbjct: 28 tgtcttagatttgtctagatacggatgtatcaagtcacattttcgtattagatacatctg 87
Query: 176 tatctaga 183
||||||||
Sbjct: 88 tatctaga 95
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 185 aaagttgagacacttatttttgtacggagggag 217
|||||||||||||||||||| | ||||||||||
Sbjct: 39 aaagttgagacacttattttgggacggagggag 7
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 185 aaagttgagacacttatttttgtacggagggag 217
|||||||||||||||||||| | ||||||||||
Sbjct: 39 aaagttgagacacttattttgggacggagggag 7
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 48.1 bits (24), Expect = 7e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 gttgagacacttatttttgtacggagggagta 219
||||||||||||||||| | ||||||||||||
Sbjct: 70 gttgagacacttattttgggacggagggagta 101
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 48.1 bits (24), Expect = 7e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 188 gttgagacacttatttttgtacggagggagta 219
||||||||||||||||| | ||||||||||||
Sbjct: 36 gttgagacacttattttgggacggagggagta 5
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 48.1 bits (24), Expect = 7e-05
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 116 tgtcttagttttgtctagattcagatgtatctaaacatattttagttgtagatacatccg 175
|||||| | ||||||||||| | |||||||||| || |||||||| |||||| ||||
Sbjct: 108 tgtcttggatttgtctagatacggatgtatctagactcattttagtgctagatatctccg 49
Query: 176 tatctaga 183
||||||||
Sbjct: 48 tatctaga 41
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 48.1 bits (24), Expect = 7e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 139 gatgtatctaaacatattttagttgtagatacatcc 174
|||||||||| || |||||||||| |||||||||||
Sbjct: 85 gatgtatctagacgtattttagttctagatacatcc 50
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 7e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 185 aaagttgagacacttatttttgtacggagggagtag 220
|||||||||||| ||||||| | |||||||||||||
Sbjct: 67 aaagttgagacatttattttgggacggagggagtag 102
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 189 ttgagacacttatttttgtacggagggagta 219
|||||||||||||||| | ||||||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagta 5
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 7e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 185 aaagttgagacacttatttttgtacggagggagtag 220
|||||||||||| ||||||| | |||||||||||||
Sbjct: 67 aaagttgagacatttattttgggacggagggagtag 102
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 189 ttgagacacttatttttgtacggagggagta 219
|||||||||||||||| | ||||||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagta 5
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 48.1 bits (24), Expect = 7e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 139 gatgtatctaaacatattttagttgtagatacatcc 174
|||||||||| || |||||||||| |||||||||||
Sbjct: 41 gatgtatctagacgtattttagttctagatacatcc 76
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 185 aaagttgagacacttatttttgtacggagggagta 219
|||||||||||||||||||| | | ||||||||||
Sbjct: 67 aaagttgagacacttattttgggatggagggagta 101
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 3e-04
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 116 tgtcttagttttgtctagattcagatgtatctaaacatattttagttgtagatacatccg 175
|||||||| |||||||| || | |||||||| | || ||||||| ||||||||||||
Sbjct: 28 tgtcttagatttgtctaaatacggatgtatcaagtcacgttttagtattagatacatccg 87
Query: 176 tatctag 182
|||||||
Sbjct: 88 tatctag 94
>RF00906;MIR1122;EU096089.1/6299-6422 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 124
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 140 atgtatctaaacatattttagttgtagatacatcc 174
||||||||| || |||||||||| |||||||||||
Sbjct: 83 atgtatctagacttattttagttatagatacatcc 49
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 185 aaagttgagacacttatttttgtacggagggagta 219
||||||||| |||||||||| | ||||||||||||
Sbjct: 66 aaagttgagtcacttattttgggacggagggagta 100
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 185 aaagttgagacacttatttttgtacggagggagta 219
|||||||||||||||||||| | ||||| ||||||
Sbjct: 39 aaagttgagacacttattttgggacggatggagta 5
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 185 aaagttgagacacttatttttgtacggagggagta 219
|||||||||||| ||||||| | ||||||||||||
Sbjct: 67 aaagttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 185 aaagttgagacacttatttttgtacggagggagta 219
|||||||||||| ||||||| | ||||||||||||
Sbjct: 67 aaagttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 189 ttgagacacttatttttgtacggagggagta 219
|||||||||||||||| | ||||||||||||
Sbjct: 35 ttgagacacttattttggaacggagggagta 5
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 185 aaagttgagacacttatttttgtacggagggagta 219
|||||||||||| ||||||| | ||||||||||||
Sbjct: 67 aaagttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 185 aaagttgagacacttatttttgtacggagggagta 219
|||||||||||||||||||| | | ||||||||||
Sbjct: 74 aaagttgagacacttattttgggatggagggagta 108
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 185 aaagttgagacacttatttttgtacggagggagta 219
||||||||| |||||||||| | ||||||||||||
Sbjct: 39 aaagttgagtcacttattttgggacggagggagta 5
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 185 aaagttgagacacttatttttgtacggagggagta 219
|||||| ||||||||||||| | ||||||||||||
Sbjct: 67 aaagttaagacacttattttgggacggagggagta 101
