miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 97.6 bits (49), Expect = 5e-20
Identities = 111/130 (85%), Gaps = 5/130 (3%)
Strand = Plus / Plus
Query: 49 cagctgcttgttcatggttcccactatcctatctccattagaacacgaggagataggctt 108
||||||||||||||||||||||||||| ||||||| || ||| | |||||||||||
Sbjct: 53 cagctgcttgttcatggttcccactattctatctc-ataggaaaa----gagataggctt 107
Query: 109 gtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtttggattgaagg 168
||||||||||||| | |||||||| || | ||| ||||||| || |||||||||||||
Sbjct: 108 gtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctttggattgaagg 167
Query: 169 gagctctgca 178
||||||||||
Sbjct: 168 gagctctgca 177
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 89.7 bits (45), Expect = 1e-17
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 98 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 157
|||||||||||||||||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 143 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 202
Query: 158 tggattgaagggagctctgca 178
|||||||||||||||||||||
Sbjct: 203 tggattgaagggagctctgca 223
Score = 81.8 bits (41), Expect = 3e-15
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 4 ggagctcctatcattccaatgaagggtc-taccggaagggtttgtgcagctgcttgttca 62
|||||||||||||||||||||||||||| ||||| ||||| || | |||||| |||||
Sbjct: 12 ggagctcctatcattccaatgaagggtcgtaccg-aagggccggttccgctgctcgttca 70
Query: 63 tggttcccactatcctatctc 83
|||||||||||||||||||||
Sbjct: 71 tggttcccactatcctatctc 91
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 89.7 bits (45), Expect = 1e-17
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 98 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 157
|||||||||||||||||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 154 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 213
Query: 158 tggattgaagggagctctgca 178
|||||||||||||||||||||
Sbjct: 214 tggattgaagggagctctgca 234
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 51 gctgcttgttcatggttcccactatcctatctc 83
|||||| ||||||||||||||||||||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcctatctc 90
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 agctcctatcattccaatgaaggg 29
||||||||||||||||||||||||
Sbjct: 14 agctcctatcattccaatgaaggg 37
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 83.8 bits (42), Expect = 8e-16
Identities = 73/82 (89%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 98 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccct-cgctgaccgctgt 156
||||| |||||||||||||||||| |||||||| || ||| |||| || ||||||||||
Sbjct: 131 gagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgt 190
Query: 157 ttggattgaagggagctctgca 178
||||| ||||||||||||||||
Sbjct: 191 ttggagtgaagggagctctgca 212
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 49 cagctgcttgttcatggttcccactatcctatctc 83
|||||||| |||||||||||||||| ||| |||||
Sbjct: 56 cagctgctcgttcatggttcccactgtcccatctc 90
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 50 agctgcttgttcatggttcccactatcctatctc 83
||||||| |||||||||||||||||||| |||||
Sbjct: 57 agctgctcgttcatggttcccactatcccatctc 90
Score = 50.1 bits (25), Expect = 1e-05
Identities = 68/81 (83%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 98 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgct-gaccgctgt 156
||||| ||| |||||||||||||| |||||||| || ||| |||| | |||||||
Sbjct: 137 gagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgctcg 196
Query: 157 ttggattgaagggagctctgc 177
|||||||||||||||||||||
Sbjct: 197 ttggattgaagggagctctgc 217
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 156 tttggattgaagggagctctgca 178
|||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgca 264
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 tgtttggattgaagggagctct 175
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 tgtttggattgaagggagctct 175
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 tgtttggattgaagggagctct 175
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
