miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
          Length = 187

 Score = 97.6 bits (49), Expect = 5e-20
 Identities = 111/130 (85%), Gaps = 5/130 (3%)
 Strand = Plus / Plus

                                                                       
Query: 49  cagctgcttgttcatggttcccactatcctatctccattagaacacgaggagataggctt 108
           ||||||||||||||||||||||||||| ||||||| ||  ||| |    |||||||||||
Sbjct: 53  cagctgcttgttcatggttcccactattctatctc-ataggaaaa----gagataggctt 107

                                                                       
Query: 109 gtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtttggattgaagg 168
           ||||||||||||| | ||||||||  || |  ||| ||||||| || |||||||||||||
Sbjct: 108 gtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctttggattgaagg 167

                     
Query: 169 gagctctgca 178
           ||||||||||
Sbjct: 168 gagctctgca 177




>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
          Length = 233

 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 72/81 (88%)
 Strand = Plus / Plus

                                                                       
Query: 98  gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 157
           |||||||||||||||||||||||| |||||||| ||  ||  |||| |||| ||||| ||
Sbjct: 143 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 202

                                
Query: 158 tggattgaagggagctctgca 178
           |||||||||||||||||||||
Sbjct: 203 tggattgaagggagctctgca 223



 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 73/81 (90%), Gaps = 2/81 (2%)
 Strand = Plus / Plus

                                                                      
Query: 4  ggagctcctatcattccaatgaagggtc-taccggaagggtttgtgcagctgcttgttca 62
          |||||||||||||||||||||||||||| ||||| |||||   || | |||||| |||||
Sbjct: 12 ggagctcctatcattccaatgaagggtcgtaccg-aagggccggttccgctgctcgttca 70

                               
Query: 63 tggttcccactatcctatctc 83
          |||||||||||||||||||||
Sbjct: 71 tggttcccactatcctatctc 91




>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
           (sorghum)
          Length = 244

 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 72/81 (88%)
 Strand = Plus / Plus

                                                                       
Query: 98  gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 157
           |||||||||||||||||||||||| |||||||| ||  ||  |||| |||| ||||| ||
Sbjct: 154 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 213

                                
Query: 158 tggattgaagggagctctgca 178
           |||||||||||||||||||||
Sbjct: 214 tggattgaagggagctctgca 234



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 51 gctgcttgttcatggttcccactatcctatctc 83
          |||||| ||||||||||||||||||||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcctatctc 90



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  agctcctatcattccaatgaaggg 29
          ||||||||||||||||||||||||
Sbjct: 14 agctcctatcattccaatgaaggg 37




>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
          Length = 222

 Score = 83.8 bits (42), Expect = 8e-16
 Identities = 73/82 (89%), Gaps = 1/82 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  gagataggcttgtggtttgcatgatcgaggagccgcttcgatccct-cgctgaccgctgt 156
           ||||| |||||||||||||||||| |||||||| || |||  |||| || ||||||||||
Sbjct: 131 gagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgctgt 190

                                 
Query: 157 ttggattgaagggagctctgca 178
           ||||| ||||||||||||||||
Sbjct: 191 ttggagtgaagggagctctgca 212



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 49 cagctgcttgttcatggttcccactatcctatctc 83
          |||||||| |||||||||||||||| ||| |||||
Sbjct: 56 cagctgctcgttcatggttcccactgtcccatctc 90




>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
          (sorghum)
          Length = 228

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 50 agctgcttgttcatggttcccactatcctatctc 83
          ||||||| |||||||||||||||||||| |||||
Sbjct: 57 agctgctcgttcatggttcccactatcccatctc 90



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 68/81 (83%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgct-gaccgctgt 156
           ||||| ||| |||||||||||||| |||||||| || |||  ||||   | |||||||  
Sbjct: 137 gagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgctcg 196

                                
Query: 157 ttggattgaagggagctctgc 177
           |||||||||||||||||||||
Sbjct: 197 ttggattgaagggagctctgc 217




>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
           Japonica Group
          Length = 274

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 156 tttggattgaagggagctctgca 178
           |||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgca 264




>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
           (papaya)
          Length = 194

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 154 tgtttggattgaagggagctct 175
           ||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181




>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
           (castor bean)
          Length = 194

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 154 tgtttggattgaagggagctct 175
           ||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181




>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
          Length = 194

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 154 tgtttggattgaagggagctct 175
           ||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181