miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48656_hvv-miR159a:pmrd
Length = 303
Score = 159 bits (80), Expect = 6e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctctgcatcttgatctattactaattagtttcctcttccttctg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcttgatctattactaattagtttcctcttccttctg 60
Query: 71 ctgcatgcaagcctggaaat 90
||||||||||||||||||||
Sbjct: 61 ctgcatgcaagcctggaaat 80
>54931_zma-miR159b:pmrd
Length = 221
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 2 tgaccgctgtttggattgaagggagctctgcatcttg 38
|||||||||||||||||||||||||||||||||||||
Sbjct: 173 tgaccgctgtttggattgaagggagctctgcatcttg 209
>54673_tae-miR159a:pmrd
Length = 177
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 ctgaccgctgtttggattgaagggagctctgcat 34
||||||||||||||||||||||||||||||||||
Sbjct: 144 ctgaccgctgtttggattgaagggagctctgcat 177
>48820_osa-miR159b:pmrd
Length = 188
Score = 65.9 bits (33), Expect = 6e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 ctgaccgctgtttggattgaagggagctctgcatcttgatc 41
|||||| || |||||||||||||||||||||||||||||||
Sbjct: 148 ctgaccactctttggattgaagggagctctgcatcttgatc 188
>48657_hvv-miR159b:pmrd
Length = 174
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctgaccgctgtttggattgaagggagctctg 31
|||||||||||||||||||||||||||||||
Sbjct: 144 ctgaccgctgtttggattgaagggagctctg 174
>54930_zma-miR159a:pmrd
Length = 246
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 5 ccgctgtttggattgaagggagctctgcatcttgatc 41
||||| ||||||||||||||||||||||||| |||||
Sbjct: 201 ccgctctttggattgaagggagctctgcatcctgatc 237
>54631_sof-miR159d:pmrd
Length = 265
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 5 ccgctgtttggattgaagggagctctgcatcttgatc 41
||||| ||||||||||||||||||||||||| |||||
Sbjct: 220 ccgctctttggattgaagggagctctgcatcctgatc 256
>54628_sof-miR159a:pmrd
Length = 265
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 5 ccgctgtttggattgaagggagctctgcatcttgatc 41
||||| ||||||||||||||||||||||||| |||||
Sbjct: 220 ccgctctttggattgaagggagctctgcatcctgatc 256
>54937_zma-miR159m:pmrd
Length = 457
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctctgcatcttgatc 41
||||||||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatc 31
>54934_zma-miR159e:pmrd
Length = 203
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 tgaccgctgtttggattgaagggagctctgc 32
||||||||||||||| |||||||||||||||
Sbjct: 173 tgaccgctgtttggagtgaagggagctctgc 203
>54653_spr-miR159:pmrd
Length = 392
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctctgcatcttgatc 41
||||||||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatc 31
>54629_sof-miR159b:pmrd
Length = 266
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 5 ccgctgtttggattgaagggagctctgcatc 35
||||| |||||||||||||||||||||||||
Sbjct: 221 ccgctctttggattgaagggagctctgcatc 251
>48819_osa-miR159a:pmrd
Length = 272
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctctgcatctt 37
|||||||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgcatctt 268
>48796_oru-miR159:pmrd
Length = 274
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctctgcatctt 37
|||||||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgcatctt 268
>54674_tae-miR159b:pmrd
Length = 255
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctctgcatct 36
||||||||||||||||||||||||||
Sbjct: 230 tttggattgaagggagctctgcatct 255
>48701_mtr-miR159c:pmrd
Length = 44
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctctgcatcttg 38
|||||||||||||||||||| |||||||
Sbjct: 1 tttggattgaagggagctctacatcttg 28
>54392_sar-miR159:pmrd
Length = 175
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ccgctgtttggattgaagggagctctg 31
||||| |||||||||||||||||||||
Sbjct: 149 ccgctctttggattgaagggagctctg 175
>51338_pgl-miR159:pmrd
Length = 226
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 ccgctgtttggattgaagggagctctg 31
||||| |||||||||||||||||||||
Sbjct: 200 ccgctctttggattgaagggagctctg 226
>48728_mtr-miR319b:pmrd
Length = 42
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 ttggattgaagggagctctgcatcttg 38
||||||||||||||||||| |||||||
Sbjct: 1 ttggattgaagggagctctacatcttg 27
>54777_vvi-miR159c:pmrd
Length = 190
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgtttggattgaagggagctct 30
||||||||||||||||||||||
Sbjct: 158 tgtttggattgaagggagctct 179
>46932_ath-miR159b:pmrd
Length = 196
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctctgcatct 36
|||||||||||||||||||| |||||
Sbjct: 168 tttggattgaagggagctcttcatct 193
>48825_osa-miR159m:pmrd
Length = 249
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctctg 31
|||||||||||||||||||||
Sbjct: 229 tttggattgaagggagctctg 249
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>54378_pvu-miR159:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 153 tttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 153 tttggattgaagggagctct 172
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48699_mtr-miR159a:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 148 tttggattgaagggagctct 167
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>48539_gma-miR159a:pmrd
Length = 214
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 175 tttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 161 tttggattgaagggagctct 180
>46933_ath-miR159c:pmrd
Length = 225
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 gtttggattgaagggagctc 29
||||||||||||||||||||
Sbjct: 194 gtttggattgaagggagctc 213
>46931_ath-miR159a:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctct 30
||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctct 182
