miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 2 tgaccgctgtttggattgaagggagctctgcatcttg 38
||||||||||||||| |||||||||||||||||||||
Sbjct: 181 tgaccgctgtttggagtgaagggagctctgcatcttg 217
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 ctgaccgctgtttggattgaagggagctctgcatcttgatc 41
|||||| || |||||||||||||||||||||||||||||||
Sbjct: 145 ctgaccactctttggattgaagggagctctgcatcttgatc 185
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 5 ccgctgtttggattgaagggagctctgcatcttgatc 41
||||| ||||||||||||||||||||||||| |||||
Sbjct: 195 ccgctctttggattgaagggagctctgcatcctgatc 231
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 5 ccgctgtttggattgaagggagctctgcatcttgatc 41
||||| ||||||||||||||||||||||||| |||||
Sbjct: 206 ccgctctttggattgaagggagctctgcatcctgatc 242
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctctgcatctt 37
|||||||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgcatctt 268
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 tgtttggattgaagggagctctgcatct 36
|||||||||||||||||||||| |||||
Sbjct: 160 tgtttggattgaagggagctctacatct 187
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctctgcatctt 37
|||||||||||||||||||| ||||||
Sbjct: 172 tttggattgaagggagctctacatctt 198
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 3 gaccgctgtttggattgaagggagctctgcatctt 37
||||||| ||||||||||||||||||||| ||||
Sbjct: 188 gaccgctcgttggattgaagggagctctgcgtctt 222
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgtttggattgaagggagctct 30
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tttggattgaagggagctctgcatct 36
|||||||||||||||||||| |||||
Sbjct: 176 tttggattgaagggagctcttcatct 201
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tgtttggattgaagggagctct 30
||||||||||||||||||||||
Sbjct: 160 tgtttggattgaagggagctct 181
