miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 78 tttcttgcaagttgtgcagttgctgtctcaagcttgctgactcc 121
|||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 78 tttcttgcaagttgtgcagttgctgtctcaagcttgctgactcc 121
|||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 78 tttcttgcaagttgtgcagttgctgtctcaagcttgctg 116
||||||||||| | ||||||||||| ||| |||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctg 13
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 71.9 bits (36), Expect = 2e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 74 tgactttcttgcaagttgtgcagttgctgtctcaagcttgctgactcc 121
|||||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct: 111 tgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 1 ggtggcaccaagcatgaggcaacaactgcattactttcaagg 42
||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 8 ggtggcaccaagcatgaggttacaactgcattacttgcaagg 49
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 77 ctttcttgcaagttgtgcagttgctgtctcaagcttgctgactcc 121
||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct: 116 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 160
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 1 ggtggcaccaagcatgaggcaacaactgcattactttcaaggaagttacaa 51
||||||||||||||| || || ||||||||||||| |||| |||| ||||
Sbjct: 8 ggtggcaccaagcattagtcaggaactgcattacttgcaagaaagtcacaa 58
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 77 ctttcttgcaagttgtgcagttgctgtctcaagcttgctgactcc 121
||||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct: 122 ctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcc 166
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 4 ggcaccaagcatgaggcaacaactgcattactt 36
||||||||||||||||||||||||||| |||||
Sbjct: 11 ggcaccaagcatgaggcaacaactgcagtactt 43
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 77 ctttcttgcaagttgtgcagttgctgtctcaagcttgctg 116
||||||||||||||||||||||| || |||||||||||||
Sbjct: 188 ctttcttgcaagttgtgcagttgttgcctcaagcttgctg 227
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 4 ggcaccaagcatgaggcaacaactgcattactttcaaggaagttacaa 51
|||||||||||||||||| ||||||||||||| |||| |||| ||||
Sbjct: 1 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 48
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 63.9 bits (32), Expect = 5e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 78 tttcttgcaagttgtgcagttgctgtctcaagcttgctgactcc 121
||||||||||| |||||||||| |||||||||||||||| ||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcc 121
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 78 tttcttgcaagttgtgcagttgctgtctcaagcttgc 114
||||||||||| | ||||||||||||||| |||||||
Sbjct: 51 tttcttgcaagatatgcagttgctgtctctagcttgc 15
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 1 ggtggcaccaagcatgaggcaacaactgcattactttcaaggaagttacaa 51
||||||||||||||||||||| ||||||||||||| |||| |||| ||||
Sbjct: 8 ggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 58
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 79 ttcttgcaagttgtgcagttgctgtctcaagcttgctgactcc 121
|||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 84 gcaagttgtgcagttgctgtctcaagcttgctgactcc 121
||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctcc 127
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 80 tcttgcaagttgtgcagttgctgtctcaagcttgctgactcc 121
||||||||||| ||||||||||| ||||||||| ||| ||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctcc 122
