miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 71.9 bits (36), Expect = 2e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 1 tttttaaagattcaactatggactacatacggaacaaaatgagtgaacttacactctgaa 60
|||||| |||||| | ||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct: 32 tttttagagattctaatatggactacatacggagcaaaatgagtgaatctacactctaaa 91
Query: 61 ttatgtctatat 72
|| ||||||||
Sbjct: 92 atacgtctatat 103
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 119
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1 tttttaaagattcaactatggactacatacggaacaaaatgagtgaa 47
|||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct: 32 tttttagagattacactatggactacatacggagcaaaatgagtgaa 78
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 165
Score = 54.0 bits (27), Expect = 4e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 23 ctacatacggaacaaaatgagtgaacttacactctgaattatgtctatata 73
||||||||||| |||||||| |||| |||||||| || ||||||||||||
Sbjct: 51 ctacatacggagcaaaatgattgaatgtacactctaaagtatgtctatata 101
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 15 actatggactacatacggaacaaaatgagtgaacttaca 53
||||| ||||||||||||| ||||||||||||| |||||
Sbjct: 122 actatagactacatacggagcaaaatgagtgaatttaca 84
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 15 actatggactacatacggaacaaaatgagtgaacttacactct 57
||||||||||||||||| | ||||||||||||| ||||||||
Sbjct: 120 actatggactacatacgaagcaaaatgagtgaatctacactct 78
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 attcaactatggactacatacggaacaaaa 39
|||| |||||||||||||||||||||||||
Sbjct: 41 attctactatggactacatacggaacaaaa 70
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 21 gactacatacggaacaaaatgagtgaacttacactctgaattatgtctat 70
||||||||||||| ||||||||||||| || ||||| || |||||||||
Sbjct: 115 gactacatacggagcaaaatgagtgaatctatactctaaaatatgtctat 66
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 50.1 bits (25), Expect = 6e-06
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 21 gactacatacggaacaaaatgagtgaacttacactctgaattatgtctatata 73
||||||||||||| ||||||||||||| || | ||| || ||||||||||||
Sbjct: 116 gactacatacggagcaaaatgagtgaatctatattctaaaatatgtctatata 64
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 21 gactacatacggaacaaaatgagtgaacttacactctgaattatgtctat 70
||||||||||||| ||||||||| ||| || ||||| || |||||||||
Sbjct: 118 gactacatacggagcaaaatgagcgaatctatactctaaaatatgtctat 69
