miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02003912.1/60341-60484 39946:Oryza sativa
Indica Group
Length = 144
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 65 acattatgggacggagggagtacat 89
|||||||||||||||||||||||||
Sbjct: 26 acattatgggacggagggagtacat 2
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 tacattatgggacggagggagtac 87
||||||||||||||||||||||||
Sbjct: 67 tacattatgggacggagggagtac 90
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 ctacattatgggacggagggagta 86
||||||||||||||||||||||||
Sbjct: 84 ctacattatgggacggagggagta 107
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 64 tacattatgggacggagggagta 86
|||||||||||||||||||||||
Sbjct: 27 tacattatgggacggagggagta 5
>RF00906;MIR1122;EU626553.1/80596-80503 4572:Triticum urartu
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 tacattatgggacggagggagtac 87
||||||||||||||||||||||||
Sbjct: 68 tacattatgggacggagggagtac 91
>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 64 tacattatgggacggagggagtac 87
||||||||||||||||||||||||
Sbjct: 27 tacattatgggacggagggagtac 4
>RF00906;MIR1122;AACV01010936.1/15061-14959 39947:Oryza sativa
Japonica Group
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 63 ctacattatgggacggagggagta 86
||||||||||||||||||||||||
Sbjct: 28 ctacattatgggacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 ctacattatgggacggagggagtaca 88
|||||||||||| |||||||||||||
Sbjct: 76 ctacattatgggccggagggagtaca 101
>RF00906;MIR1122;AAAA02015439.1/1131-1234 39946:Oryza sativa
Indica Group
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 63 ctacattatgggacggagggagta 86
||||||||||||||||||||||||
Sbjct: 28 ctacattatgggacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 ctacattatgggacggagggagtaca 88
|||||||||||| |||||||||||||
Sbjct: 77 ctacattatgggccggagggagtaca 102
>RF00906;MIR1122;AL831801.4/77594-77709 4530:Oryza sativa (rice)
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 59 actactacattatgggacggagggagta 86
||||||||||| ||||||||||||||||
Sbjct: 32 actactacattttgggacggagggagta 5
>RF00906;MIR1122;AP008215.1/10902261-10902381 39947:Oryza sativa
Japonica Group
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 attatgggacggagggagtacatt 90
||||||||||||||||||||||||
Sbjct: 98 attatgggacggagggagtacatt 121
>RF00906;MIR1122;AACV01021120.1/13659-13774 39947:Oryza sativa
Japonica Group
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 63 ctacattatgggacggagggagta 86
||||||||||||||||||||||||
Sbjct: 28 ctacattatgggacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 63 ctacattatgggacggagggagta 86
||||||||||||||||||||||||
Sbjct: 89 ctacattatgggacggagggagta 112
>RF00906;MIR1122;AAAA02017713.1/95926-95807 39946:Oryza sativa
Indica Group
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 attatgggacggagggagtacatt 90
||||||||||||||||||||||||
Sbjct: 97 attatgggacggagggagtacatt 120
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 64 tacattatgggacggagggagta 86
|||||||||||||||||||||||
Sbjct: 27 tacattatgggacggagggagta 5
>RF00906;MIR1122;AJ507395.1/8084-8185 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 attatgggacggagggagtacat 89
|||||||||||||||||||||||
Sbjct: 79 attatgggacggagggagtacat 101
>RF00906;MIR1122;AACV01001132.1/47322-47207 39947:Oryza sativa
Japonica Group
Length = 116
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 61 tactacattatgggacggagggagtac 87
||||| |||||||||||||||||||||
Sbjct: 30 tactatattatgggacggagggagtac 4
>RF00906;MIR1122;AAAA02033572.1/45748-45869 39946:Oryza sativa
Indica Group
Length = 122
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 attatgggacggagggagtacat 89
|||||||||||||||||||||||
Sbjct: 99 attatgggacggagggagtacat 121
>RF00906;MIR1122;AACV01010090.1/14054-14174 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 67 attatgggacggagggagtacat 89
|||||||||||||||||||||||
Sbjct: 24 attatgggacggagggagtacat 2
>RF00906;MIR1122;AAAA02017627.1/6518-6673 39946:Oryza sativa
Indica Group
Length = 156
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 61 tactacattatgggacggagggagtac 87
||||| |||||||||||||||||||||
Sbjct: 30 tactatattatgggacggagggagtac 4
>RF00906;MIR1122;AC133860.5/153753-153857 39947:Oryza sativa
Japonica Group
Length = 105
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 cattatgggacggagggagtaca 88
|||||||||||||||||||||||
Sbjct: 81 cattatgggacggagggagtaca 103
>RF00906;MIR1122;AP008212.1/26495633-26495543 39947:Oryza sativa
Japonica Group
Length = 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 attatgggacggagggagtacat 89
|||||||||||||||||||||||
Sbjct: 68 attatgggacggagggagtacat 90
>RF00906;MIR1122;AL606607.3/13860-13742 39947:Oryza sativa
Japonica Group
Length = 119
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 67 attatgggacggagggagtacat 89
|||||||||||||||||||||||
Sbjct: 24 attatgggacggagggagtacat 2
>RF00906;MIR1122;CT009735.1/55205-55297 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 attatgggacggagggagtaca 88
||||||||||||||||||||||
Sbjct: 70 attatgggacggagggagtaca 91
>RF00906;MIR1122;EF059989.1/54267-54145 29664:Brachypodium
sylvaticum
Length = 123
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 attatgggacggagggagtaca 88
||||||||||||||||||||||
Sbjct: 100 attatgggacggagggagtaca 121
>RF00906;MIR1122;AC105928.2/150423-150279 39947:Oryza sativa
Japonica Group
Length = 145
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 120 acattatgggacggagggagta 141
>RF00906;MIR1122;AAAA02022617.1/34247-34092 39946:Oryza sativa
Indica Group
Length = 156
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 67 attatgggacggagggagtaca 88
||||||||||||||||||||||
Sbjct: 24 attatgggacggagggagtaca 3
>RF00906;MIR1122;AAAA02039729.1/233-133 39946:Oryza sativa Indica
Group
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 26 acattatgggacggagggagta 5
>RF00906;MIR1122;AAAA02020328.1/21348-21502 39946:Oryza sativa
Indica Group
Length = 155
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 61 tactacattatgggacggagggagta 86
||||| ||||||||||||||||||||
Sbjct: 126 tactatattatgggacggagggagta 151
>RF00906;MIR1122;AP003239.3/11814-11971 39947:Oryza sativa Japonica
Group
Length = 158
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 133 acattatgggacggagggagta 154
>RF00906;MIR1122;AAAA02010985.1/48487-48349 39946:Oryza sativa
Indica Group
Length = 139
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 114 acattatgggacggagggagta 135
>RF00906;MIR1122;AACV01014972.1/11020-11117 39947:Oryza sativa
Japonica Group
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 73 acattatgggacggagggagta 94
>RF00906;MIR1122;AP008208.1/20971646-20971521 39947:Oryza sativa
Japonica Group
Length = 126
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 26 acattatgggacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 101 acattatgggacggagggagta 122
>RF00906;MIR1122;AAAA02006653.1/17498-17400 39946:Oryza sativa
Indica Group
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 74 acattatgggacggagggagta 95
>RF00906;MIR1122;AP008207.1/20312711-20312849 39947:Oryza sativa
Japonica Group
Length = 139
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 26 acattatgggacggagggagta 5
>RF00906;MIR1122;AP008212.1/30480161-30480258 39947:Oryza sativa
Japonica Group
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 26 acattatgggacggagggagta 5
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 73 acattatgggacggagggagta 94
>RF00906;MIR1122;AACV01001496.1/5025-4887 39947:Oryza sativa
Japonica Group
Length = 139
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 26 acattatgggacggagggagta 5
>RF00906;MIR1122;AP004361.4/1077-1207 39947:Oryza sativa Japonica
Group
Length = 131
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 106 acattatgggacggagggagta 127
>RF00906;MIR1122;AACV01005006.1/10159-10274 39947:Oryza sativa
Japonica Group
Length = 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 68 ttatgggacggagggagtacat 89
||||||||||||||||||||||
Sbjct: 23 ttatgggacggagggagtacat 2
>RF00906;MIR1122;AACV01018687.1/6312-6175 39947:Oryza sativa
Japonica Group
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 68 ttatgggacggagggagtacat 89
||||||||||||||||||||||
Sbjct: 23 ttatgggacggagggagtacat 2
>RF00906;MIR1122;AP008215.1/17611882-17611726 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 attatgggacggagggagtaca 88
||||||||||||||||||||||
Sbjct: 134 attatgggacggagggagtaca 155
>RF00906;MIR1122;AP008211.1/22648108-22648219 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 67 attatgggacggagggagtaca 88
||||||||||||||||||||||
Sbjct: 24 attatgggacggagggagtaca 3
>RF00906;MIR1122;AAAA02008004.1/32040-31914 39946:Oryza sativa
Indica Group
Length = 127
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 acattatgggacggagggagta 86
||||||||||||||||||||||
Sbjct: 102 acattatgggacggagggagta 123
>RF00906;MIR1122;AP002485.2/92019-92165 39947:Oryza sativa
Japonica Group
Length = 147
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 61 tactacattatgggacggagggagta 86
||||| ||||||||||||||||||||
Sbjct: 30 tactatattatgggacggagggagta 5
