miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54740_tae-miR2023b:pmrd
Length = 114
Score = 125 bits (63), Expect = 8e-30
Identities = 96/107 (89%), Gaps = 5/107 (4%)
Strand = Plus / Minus
Query: 7 gtttttgccggttgaacgacctcaccatgtcgaccgcctcttccttgacaggtatcagga 66
||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct: 108 gtttttgccggttgaacgacctcaccatgtcgaccgcctcttcctcgacaagtgccagg- 50
Query: 67 agaaaagatctgctcgtgccatgttgaggtcgttcaaccagcaaaac 113
|||||||||||||||||| |||||||||||||||||||||||
Sbjct: 49 ----gagatctgctcgtgccatgatgaggtcgttcaaccagcaaaac 7
>54739_tae-miR2023a:pmrd
Length = 117
Score = 125 bits (63), Expect = 8e-30
Identities = 96/107 (89%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 7 gtttttgccggttgaacgacctcaccatgtcgaccgcctcttccttgacaggtatcagga 66
||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct: 7 gtttttgccggttgaacgacctcaccatgtcgaccgcctcttcctcgacaagtgccagg- 65
Query: 67 agaaaagatctgctcgtgccatgttgaggtcgttcaaccagcaaaac 113
|||||||||||||||||| |||||||||||||||||||||||
Sbjct: 66 ----gagatctgctcgtgccatgatgaggtcgttcaaccagcaaaac 108
>54729_tae-miR2013:pmrd
Length = 90
Score = 71.9 bits (36), Expect = 1e-13
Identities = 82/96 (85%), Gaps = 6/96 (6%)
Strand = Plus / Plus
Query: 13 gccggttgaacgacctcaccatgtcgaccgcctcttccttgacaggtatcaggaagaaaa 72
|||||||||||||||||||||||||||||||||| |||| | | || |||| |
Sbjct: 1 gccggttgaacgacctcaccatgtcgaccgcctc-tcctcaagaagtgccagg-----ga 54
Query: 73 gatctgctcgtgccatgttgaggtcgttcaaccagc 108
||||||||||||||||| ||||||||||||||||||
Sbjct: 55 gatctgctcgtgccatgatgaggtcgttcaaccagc 90
>54741_tae-miR2023c:pmrd
Length = 133
Score = 63.9 bits (32), Expect = 2e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 76 ctgctcgtgccatgttgaggtcgttcaaccagcaaaacggcggc 119
||||||||||| || |||||| ||||||||||||||||||||||
Sbjct: 87 ctgctcgtgccttgatgaggttgttcaaccagcaaaacggcggc 130
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 gtttttgccggttgaacgacctcaccatg 35
||||||||||||||| |||||||||||||
Sbjct: 7 gtttttgccggttgatcgacctcaccatg 35
