miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 224 bits (113), Expect = 2e-58
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 1 cacaagtggatgaagctgccagcatgatctgatcacagtagttctctagctgatgatgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cacaagtggatgaagctgccagcatgatctgatcacagtagttctctagctgatgatgat 63
Query: 61 ttacaaaacctagagacatgcatcagatcatctggcagtttcatcttctcatg 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ttacaaaacctagagacatgcatcagatcatctggcagtttcatcttctcatg 116
>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 gtggatgaagctgccagcatgatctga 32
|||||||||||||||||||||||||||
Sbjct: 9 gtggatgaagctgccagcatgatctga 35
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 82 atcagatcatctggcagtttcatcttct 109
|||||||| |||||||||||||||||||
Sbjct: 132 atcagatcgtctggcagtttcatcttct 159
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 82 atcagatcatctggcagtttcatcttctc 110
||||||||||||||||||||||| |||||
Sbjct: 80 atcagatcatctggcagtttcattttctc 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gatgaagctgccagcatgatctga 32
||||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 cacaagtggatgaagctgccagcatgatctgat 33
||||||| | |||||||||||||||||||||||
Sbjct: 4 cacaagttggtgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
Group
Length = 125
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 cacaagtggatgaagctgccagcatgatctgat 33
||||||| | |||||||||||||||||||||||
Sbjct: 4 cacaagttggtgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctgatc 34
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgatc 37
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 82 atcagatcatctggcagtttcatcttctcatg 113
||||||||||| ||||| ||||||||||||||
Sbjct: 54 atcagatcatccggcagcttcatcttctcatg 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctga 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctgatc 34
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgatc 37
>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctgat 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa
Japonica Group
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctgat 33
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctga 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU548950.1/213-338 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatgaagctgccagcatgatct 30
||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctga 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgaagctgccagcatgatctga 32
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgaagctgccagcatgatctg 31
||||||||||||||||||||||
Sbjct: 13 atgaagctgccagcatgatctg 34
