miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AP008208.1/31224491-31224356 39947:Oryza sativa
           Japonica Group
          Length = 136

 Score =  262 bits (132), Expect = 1e-69
 Identities = 132/132 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctggttgtgtagccaaggatgacttgccggcctggtttgtgttcatcagcaatccagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   gctggttgtgtagccaaggatgacttgccggcctggtttgtgttcatcagcaatccagca 61

                                                                       
Query: 61  tatgctgtattgccgtgtgtgatcgatcgatgcatggaccggcaagttattttctttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  tatgctgtattgccgtgtgtgatcgatcgatgcatggaccggcaagttattttctttggc 121

                       
Query: 121 tacattacaacc 132
           ||||||||||||
Sbjct: 122 tacattacaacc 133




>RF00645;MIR169_2;AAAA02007387.1/24033-23898 39946:Oryza sativa
           Indica Group
          Length = 136

 Score =  254 bits (128), Expect = 3e-67
 Identities = 131/132 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctggttgtgtagccaaggatgacttgccggcctggtttgtgttcatcagcaatccagca 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2   gctggttgtgtagccaaggatgacttgccggcctgatttgtgttcatcagcaatccagca 61

                                                                       
Query: 61  tatgctgtattgccgtgtgtgatcgatcgatgcatggaccggcaagttattttctttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  tatgctgtattgccgtgtgtgatcgatcgatgcatggaccggcaagttattttctttggc 121

                       
Query: 121 tacattacaacc 132
           ||||||||||||
Sbjct: 122 tacattacaacc 133




>RF00645;MIR169_2;ABIM01024501.1/10588-10497 3649:Carica papaya
          (papaya)
          Length = 92

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 8  gtgtagccaaggatgacttgccggc 32
          |||||||||||||||||||||||||
Sbjct: 9  gtgtagccaaggatgacttgccggc 33




>RF00645;MIR169_2;ABXC01002876.1/68453-68594 4558:Sorghum bicolor
          (sorghum)
          Length = 142

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  tgtagccaaggatgacttgccggcc 33
          |||||||||||||||||||||||||
Sbjct: 10 tgtagccaaggatgacttgccggcc 34




>RF00865;MIR169_5;ABXC01001391.1/122449-122522 4558:Sorghum
          bicolor (sorghum)
          Length = 74

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 10 gtagccaaggatgacttgccggc 32
          |||||||||||||||||||||||
Sbjct: 55 gtagccaaggatgacttgccggc 33




>RF00645;MIR169_2;ABXC01001391.1/122512-122383 4558:Sorghum
          bicolor (sorghum)
          Length = 130

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 gtagccaaggatgacttgccggc 32
          |||||||||||||||||||||||
Sbjct: 10 gtagccaaggatgacttgccggc 32




>RF00645;MIR169_2;ABIM01016748.1/13946-13822 3649:Carica papaya
          (papaya)
          Length = 125

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 agccaaggatgacttgccggcc 33
          ||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggcc 37




>RF00645;MIR169_2;AP008214.1/7634984-7635113 39947:Oryza sativa
          Japonica Group
          Length = 130

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 agccaaggatgacttgccggcc 33
          ||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcc 34