miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48889_osa-miR169n:pmrd
Length = 177
Score = 351 bits (177), Expect = 1e-97
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 1 ctccctttggtagccaagaatgacttgcctatgtgttttgccttgtgttggctcatccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccctttggtagccaagaatgacttgcctatgtgttttgccttgtgttggctcatccat 60
Query: 61 ccatctatcagccgttgcagatttgcagtggcagattaaagggtttcagaaagaaattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccatctatcagccgttgcagatttgcagtggcagattaaagggtttcagaaagaaattct 120
Query: 121 tgtgatggatgtgcaatgtggctgcatgggccggtcttcttggctagccagagtggc 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtgatggatgtgcaatgtggctgcatgggccggtcttcttggctagccagagtggc 177
>48890_osa-miR169o:pmrd
Length = 173
Score = 157 bits (79), Expect = 3e-39
Identities = 159/182 (87%), Gaps = 14/182 (7%)
Strand = Plus / Plus
Query: 1 ctccctttggtagccaagaatgacttgcctatgtgttttgccttgtgttggctcatccat 60
||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||||
Sbjct: 1 ctccctttggtagccaagaatgacttgcctacgc-ttttgccctctgttggctcatccat 59
Query: 61 cc----atctatcagccgttgcagatttgcagtggcagattaaagggtttcagaaagaaa 116
|| ||||||| ||| | |||||| |||||||||| ||||||| ||||||||
Sbjct: 60 ccgtctatctatctgccatggcagat-------ggcagattaa-gggtttctgaaagaaa 111
Query: 117 ttcttgtgat-ggatgtgcaatgtggctgcatgggccggtcttcttggctagccagagtg 175
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 112 ttcttgtgataggatgtgcaatgaggctgcatgggccggtcttcttggctagccagagtg 171
Query: 176 gc 177
||
Sbjct: 172 gc 173
>54445_sbi-miR169i:pmrd
Length = 169
Score = 79.8 bits (40), Expect = 6e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 132 tgcaatgtggctgcatgggccggtcttcttggctagccagagtg 175
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 116 tgcaatgtggctgcatgggcaggtcttcttggctagccagagtg 159
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcctatg 33
|||| |||||||||||||||||||||||
Sbjct: 16 tttgctagccaagaatgacttgcctatg 43
>54440_sbi-miR169d:pmrd
Length = 125
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 cctttggtagccaagaatgacttgccta 31
||||||||||||||| ||||||||||||
Sbjct: 14 cctttggtagccaaggatgacttgccta 41
>54439_sbi-miR169c:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 cctttggtagccaagaatgacttgccta 31
||||||||||||||| ||||||||||||
Sbjct: 14 cctttggtagccaaggatgacttgccta 41
>51675_ptc-miR169r:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcctat 32
||||||||||||| |||||||||||||
Sbjct: 6 tttggtagccaaggatgacttgcctat 32
>48354_bna-miR169e:pmrd
Length = 276
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcctat 32
||||||||||||| |||||||||||||
Sbjct: 246 tttggtagccaaggatgacttgcctat 272
>48352_bna-miR169c:pmrd
Length = 176
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcctat 32
||||||||||||| |||||||||||||
Sbjct: 21 tttggtagccaaggatgacttgcctat 47
>48355_bna-miR169f:pmrd
Length = 201
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgccta 31
||||||||||||| ||||||||||||
Sbjct: 26 tttggtagccaaggatgacttgccta 51
>48353_bna-miR169d:pmrd
Length = 220
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgccta 31
||||||||||||| ||||||||||||
Sbjct: 35 tttggtagccaaggatgacttgccta 60
>54548_sly-miR169b:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcct 30
||||||||||||| |||||||||||
Sbjct: 166 tttggtagccaaggatgacttgcct 190
>52726_ptc-miRf10904-akr:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcct 30
||||||||||||| |||||||||||
Sbjct: 10 tttggtagccaaggatgacttgcct 34
>51670_ptc-miR169m:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcct 30
||||||||||||| |||||||||||
Sbjct: 6 tttggtagccaaggatgacttgcct 30
>51668_ptc-miR169k:pmrd
Length = 203
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcct 30
||||||||||||| |||||||||||
Sbjct: 6 tttggtagccaaggatgacttgcct 30
>51666_ptc-miR169i:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcct 30
||||||||||||| |||||||||||
Sbjct: 6 tttggtagccaaggatgacttgcct 30
>48882_osa-miR169g:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 tggtagccaagaatgacttgcctat 32
||||||||||| |||||||||||||
Sbjct: 8 tggtagccaaggatgacttgcctat 32
>48487_ghb-miR169a:pmrd
Length = 189
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcct 30
||||||||||||| |||||||||||
Sbjct: 45 tttggtagccaaggatgacttgcct 69
>46973_ath-miR169m:pmrd
Length = 212
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcct 30
||||||||||||| |||||||||||
Sbjct: 37 tttggtagccaaggatgacttgcct 61
>46971_ath-miR169k:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcct 30
||||||||||||| |||||||||||
Sbjct: 38 tttggtagccaaggatgacttgcct 62
>46969_ath-miR169i:pmrd
Length = 206
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcct 30
||||||||||||| |||||||||||
Sbjct: 35 tttggtagccaaggatgacttgcct 59
>55015_zma-miR169m:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tagccaagaatgacttgcctatgt 34
|||||||| |||||||||||||||
Sbjct: 1 tagccaaggatgacttgcctatgt 24
>55014_zma-miR169l:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tagccaagaatgacttgcctatgt 34
|||||||| |||||||||||||||
Sbjct: 1 tagccaaggatgacttgcctatgt 24
>55011_zma-miR169i:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 8 tggtagccaagaatgacttgcctatgtg 35
||||||||||| ||||||||||| ||||
Sbjct: 18 tggtagccaaggatgacttgcctgtgtg 45
>55010_zma-miR169h:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tagccaagaatgacttgcctatgt 34
|||||||| |||||||||||||||
Sbjct: 21 tagccaaggatgacttgcctatgt 44
>55009_zma-miR169g:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 tggtagccaagaatgacttgccta 31
||||||||||| ||||||||||||
Sbjct: 18 tggtagccaaggatgacttgccta 41
>55007_zma-miR169e:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 11 tagccaagaatgacttgcctatgt 34
|||||||| |||||||||||||||
Sbjct: 109 tagccaaggatgacttgcctatgt 86
>55006_zma-miR169d:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 11 tagccaagaatgacttgcctatgt 34
|||||||| |||||||||||||||
Sbjct: 109 tagccaaggatgacttgcctatgt 86
>54826_vvi-miR169x:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 tggtagccaagaatgacttgccta 31
||||||||||| ||||||||||||
Sbjct: 9 tggtagccaaggatgacttgccta 32
>54450_sbi-miR169n:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 ggtagccaagaatgacttgcctat 32
|||||||||| |||||||||||||
Sbjct: 1 ggtagccaaggatgacttgcctat 24
>54441_sbi-miR169e:pmrd
Length = 240
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 8 tggtagccaagaatgacttgcctatgtg 35
||||||||||| ||||||||||| ||||
Sbjct: 18 tggtagccaaggatgacttgcctgtgtg 45
>51680_ptc-miR169w:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcc 29
||||||||||||| ||||||||||
Sbjct: 5 tttggtagccaaggatgacttgcc 28
>51679_ptc-miR169v:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 tttggtagccaagaatgacttgcc 29
||||||||||||| ||||||||||
Sbjct: 5 tttggtagccaaggatgacttgcc 28
