miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48914_osa-miR319a:pmrd
Length = 191
Score = 379 bits (191), Expect = e-106
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 1 tgtgtaagaagagagctctcttcagtccactctcagatggctgtagggttttattagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgtaagaagagagctctcttcagtccactctcagatggctgtagggttttattagctg 60
Query: 61 ccgaatcatccattcacctaccaagaaagttgcaggagtgtatctcttggtagcggactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgaatcatccattcacctaccaagaaagttgcaggagtgtatctcttggtagcggactg 120
Query: 121 gatgacgcgggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatgacgcgggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctcc 180
Query: 181 cttgctcaagc 191
|||||||||||
Sbjct: 181 cttgctcaagc 191
>55049_zma-miR319a:pmrd
Length = 209
Score = 153 bits (77), Expect = 6e-38
Identities = 154/178 (86%), Gaps = 5/178 (2%)
Strand = Plus / Plus
Query: 8 gaagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatc 67
|||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||
Sbjct: 18 gaagagagctctcttcagtccactctgaaatggctgtagggtttcattagctgccgactc 77
Query: 68 atccattcacctaccaagaaagttg--caggagtgtatctcttggtagcggactggatga 125
|||||||||||| ||||||| || |||| || |||||||||| || ||| ||
Sbjct: 78 atccattcacctgccaagaaccatggacaggtctg---gtcttggtagccgagtgggtgg 134
Query: 126 cgcgggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctccctt 183
||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 135 cgcgggagctaaaatcaagctctacgctgtttgtggttggactgaagggtgctccctt 192
>55051_zma-miR319c:pmrd
Length = 216
Score = 119 bits (60), Expect = 8e-28
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 8 gaagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatc 67
|||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||
Sbjct: 18 gaagagagctctcttcagtccactctaaaatggctgtagggtttcattagctgccgactc 77
Query: 68 atccattcacctaccaagaa 87
|||||||||||| |||||||
Sbjct: 78 atccattcacctgccaagaa 97
>54469_sbi-miR319b:pmrd
Length = 179
Score = 119 bits (60), Expect = 8e-28
Identities = 149/179 (83%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 11 gagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatcatc 70
||||||||||||||||||||||| | |||||||||| |||| |||||||||||| |||||
Sbjct: 1 gagagctctcttcagtccactctaaaatggctgtagagtttcattagctgccgactcatc 60
Query: 71 cattcacctaccaagaaagttgcaggagtg------tatctcttggtagcggactggatg 124
||||||||||||||||| || | || | | |||||||||| || ||| ||
Sbjct: 61 cattcacctaccaagaaccatggacaagcgataggtttggtcttggtagccgagtgggtg 120
Query: 125 acgcgggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctccctt 183
||||||||||||||| |||||| ||| |||| |||||||||||||||||||||||||
Sbjct: 121 gcgcgggagctaaaatcaagctctacgctgtttatggttggactgaagggtgctccctt 179
>46884_aqc-miR319:pmrd
Length = 177
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agagagctctcttcagtccactc 32
|||||||||||||||||||||||
Sbjct: 1 agagagctctcttcagtccactc 23
>54844_vvi-miR319c:pmrd
Length = 182
Score = 44.1 bits (22), Expect = 4e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 8 gaagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatc 67
|||||||||| |||||||||||||| | |||| ||||| || |||||||||||| ||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
Query: 68 at 69
||
Sbjct: 68 at 69
>48915_osa-miR319b:pmrd
Length = 197
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 149 gcgccgtttgtggttggactgaagggtgctccct 182
||||||| | || |||||||||||||||||||||
Sbjct: 155 gcgccgtctttgcttggactgaagggtgctccct 188
>55052_zma-miR319d:pmrd
Length = 212
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggtgctccct 182
|||||||||||||||||||||
Sbjct: 174 ttggactgaagggtgctccct 194
>55050_zma-miR319b:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggtgctccct 182
|||||||||||||||||||||
Sbjct: 175 ttggactgaagggtgctccct 195
>54642_sof-miR319a:pmrd
Length = 539
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggtgctccct 182
|||||||||||||||||||||
Sbjct: 1 ttggactgaagggtgctccct 21
>54468_sbi-miR319:pmrd
Length = 249
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggtgctccct 182
|||||||||||||||||||||
Sbjct: 191 ttggactgaagggtgctccct 211
>51707_ptc-miR319a:pmrd
Length = 188
Score = 42.1 bits (21), Expect = 2e-04
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 9 aagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatca 68
||||||||| |||||||||||||| | ||| ||||| ||| |||||||||||| |||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 68
Query: 69 t 69
|
Sbjct: 69 t 69
>55053_zma-miR319e:pmrd
Length = 173
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggtgctccc 181
||||||||||||||||||||
Sbjct: 154 ttggactgaagggtgctccc 173
>51709_ptc-miR319c:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 aagagagctctcttcagtccactc 32
||||||||| ||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactc 32
>48572_gma-miR319a:pmrd
Length = 207
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 aagagagctctcttcagtccactc 32
||||||||| ||||||||||||||
Sbjct: 19 aagagagctttcttcagtccactc 42
