miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AACV01002034.1/2269-2077 39947:Oryza sativa Japonica
Group
Length = 193
Score = 379 bits (191), Expect = e-104
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 1 tgtgtaagaagagagctctcttcagtccactctcagatggctgtagggttttattagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgtaagaagagagctctcttcagtccactctcagatggctgtagggttttattagctg 60
Query: 61 ccgaatcatccattcacctaccaagaaagttgcaggagtgtatctcttggtagcggactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgaatcatccattcacctaccaagaaagttgcaggagtgtatctcttggtagcggactg 120
Query: 121 gatgacgcgggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatgacgcgggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctcc 180
Query: 181 cttgctcaagc 191
|||||||||||
Sbjct: 181 cttgctcaagc 191
>RF00638;MIR159;ABXC01002190.1/69225-69027 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 125 bits (63), Expect = 2e-28
Identities = 152/182 (83%), Gaps = 6/182 (3%)
Strand = Plus / Plus
Query: 8 gaagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatc 67
|||||||||||||||||||||||||| | |||||||||| |||| |||||||||||| ||
Sbjct: 8 gaagagagctctcttcagtccactctaaaatggctgtagagtttcattagctgccgactc 67
Query: 68 atccattcacctaccaagaaagttgcaggagtg------tatctcttggtagcggactgg 121
|||||||||||||||||||| || | || | | |||||||||| || |||
Sbjct: 68 atccattcacctaccaagaaccatggacaagcgataggtttggtcttggtagccgagtgg 127
Query: 122 atgacgcgggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctccc 181
|| ||||||||||||||| |||||| ||| |||| |||||||||||||||||||||||
Sbjct: 128 gtggcgcgggagctaaaatcaagctctacgctgtttatggttggactgaagggtgctccc 187
Query: 182 tt 183
||
Sbjct: 188 tt 189
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 50.1 bits (25), Expect = 1e-05
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 9 aagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatca 68
||||||||| |||||||||||||| | |||| ||||| ||| |||||||||||| |||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 68
Query: 69 t 69
|
Sbjct: 69 t 69
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 aagagagctctcttcagtccactc 32
||||||||||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactc 32
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 aagagagctctcttcagtccactc 32
||||||||||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactc 32
>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
Japonica Group
Length = 198
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 149 gcgccgtttgtggttggactgaagggtgctccct 182
||||||| | || |||||||||||||||||||||
Sbjct: 154 gcgccgtctttgcttggactgaagggtgctccct 187
