miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48915_osa-miR319b:pmrd
Length = 197
Score = 391 bits (197), Expect = e-109
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 1 gatggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagct 60
Query: 61 gccgactcattcacccacatgccaagcaagaaacgcttgagatagcgaagcttagcagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gccgactcattcacccacatgccaagcaagaaacgcttgagatagcgaagcttagcagat 120
Query: 121 gagtgaatgaagcgggaggtaacgttccgatctcgcgccgtctttgcttggactgaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagtgaatgaagcgggaggtaacgttccgatctcgcgccgtctttgcttggactgaaggg 180
Query: 181 tgctccctcctcctcga 197
|||||||||||||||||
Sbjct: 181 tgctccctcctcctcga 197
>55050_zma-miR319b:pmrd
Length = 213
Score = 210 bits (106), Expect = 3e-55
Identities = 173/192 (90%), Gaps = 5/192 (2%)
Strand = Plus / Plus
Query: 3 tggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgc 62
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 13 tggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgc 72
Query: 63 cgactcattcacccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatga 122
|||||||||||||||||||||||||| || || || | | ||||| ||||||||
Sbjct: 73 cgactcattcacccacatgccaagca--aacggccatggaaacc--agctttgcagatga 128
Query: 123 gtgaatgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggt 181
|||||||||||||||||| || | | ||||||||| ||||||||||||||||||||||||
Sbjct: 129 gtgaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggt 188
Query: 182 gctccctcctcc 193
||||||||||||
Sbjct: 189 gctccctcctcc 200
>54468_sbi-miR319:pmrd
Length = 249
Score = 198 bits (100), Expect = 1e-51
Identities = 172/192 (89%), Gaps = 3/192 (1%)
Strand = Plus / Plus
Query: 4 ggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgcc 63
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 26 ggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgcc 85
Query: 64 gactcattcacccacatgccaagcaagaaacgcttgaga-tagcgaagcttagcagatga 122
|||||||||||||||||||||||||| | | || | ||| ||||| ||||||||
Sbjct: 86 gactcattcacccacatgccaagcaaacggccatggaaacgagc-tagctttgcagatga 144
Query: 123 gtgaatgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggt 181
|||||||||||||||||| || | | ||||||||| || |||||||||||||||||||||
Sbjct: 145 gtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggt 204
Query: 182 gctccctcctcc 193
||||||||||||
Sbjct: 205 gctccctcctcc 216
>55052_zma-miR319d:pmrd
Length = 212
Score = 194 bits (98), Expect = 2e-50
Identities = 168/188 (89%), Gaps = 5/188 (2%)
Strand = Plus / Plus
Query: 4 ggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgcc 63
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 13 ggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgcc 72
Query: 64 gactcattcacccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgag 123
|||||||||||||||||||||||| ||||| | | || ||||| |||||||||
Sbjct: 73 gactcattcacccacatgccaagc---aaacggccatggaaacg-agcttcgcagatgag 128
Query: 124 tgaatgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtg 182
||||||||||||||||| || | | ||||||||| |||||||||||||||||||||||||
Sbjct: 129 tgaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtg 188
Query: 183 ctccctcc 190
||||||||
Sbjct: 189 ctccctcc 196
>55053_zma-miR319e:pmrd
Length = 173
Score = 172 bits (87), Expect = 6e-44
Identities = 157/177 (88%), Gaps = 5/177 (2%)
Strand = Plus / Plus
Query: 12 gagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactcatt 71
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgccgactcatt 60
Query: 72 cacccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgagtgaatgaa 131
|||||||||||||||| ||||| | | || ||||| |||||||||||||||||
Sbjct: 61 cacccacatgccaagc---aaacggccatggaaacg-agcttcgcagatgagtgaatgaa 116
Query: 132 gcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtgctccc 187
||||||||| || | | ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 117 gcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctccc 173
>54844_vvi-miR319c:pmrd
Length = 182
Score = 65.9 bits (33), Expect = 1e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 9 gaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactc 68
||||||||| | |||||||||||||||||| || |||| | |||||||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
Query: 69 attca 73
|||||
Sbjct: 68 attca 72
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 165 tgcttggactgaagggtgctccct 188
|||||||||||||||| |||||||
Sbjct: 148 tgcttggactgaagggagctccct 171
>51707_ptc-miR319a:pmrd
Length = 188
Score = 63.9 bits (32), Expect = 4e-11
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 10 aagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgccgactca 69
|||||||| | |||||||||||||||||| ||| |||| | |||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 68
Query: 70 ttca 73
||||
Sbjct: 69 ttca 72
>54642_sof-miR319a:pmrd
Length = 539
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 168 ttggactgaagggtgctccctcctcc 193
||||||||||||||||||||||||||
Sbjct: 1 ttggactgaagggtgctccctcctcc 26
>54846_vvi-miR319f:pmrd
Length = 193
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 aagagagcgtccttcagtccactcatgg 37
|||||||| |||||||||||||||||||
Sbjct: 9 aagagagcttccttcagtccactcatgg 36
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 160 gtctttgcttggactgaagggtgctccct 188
|||| |||||||||||||||| |||||||
Sbjct: 154 gtctgtgcttggactgaagggagctccct 182
>51712_ptc-miR319f:pmrd
Length = 202
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 47 gggtcgaattagctgccgactcattca 73
|||| ||||||||||||||||||||||
Sbjct: 49 gggttgaattagctgccgactcattca 75
>51710_ptc-miR319d:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 53/62 (85%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 13 agagcgtccttcagtccactcatgggcggtgctaggg-tcgaattagctgccgactcatt 71
||||| ||||||||||||||||||| ||| |||| | | ||||||||||||||||||
Sbjct: 12 agagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcatt 71
Query: 72 ca 73
||
Sbjct: 72 ca 73
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 165 tgcttggactgaagggtgctccct 188
|||||||||||||||| |||||||
Sbjct: 162 tgcttggactgaagggagctccct 185
>51351_ppl-miR319:pmrd
Length = 204
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 gaattagctgccgactcattca 73
||||||||||||||||||||||
Sbjct: 53 gaattagctgccgactcattca 74
>48914_osa-miR319a:pmrd
Length = 191
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 155 gcgccgtctttgcttggactgaagggtgctccct 188
||||||| | || |||||||||||||||||||||
Sbjct: 149 gcgccgtttgtggttggactgaagggtgctccct 182
>48694_mma-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 161 tctttgcttggactgaagggtgctccctcc 190
|||||| ||||||||||||| |||||||||
Sbjct: 154 tctttgattggactgaagggagctccctcc 183
>48573_gma-miR319b:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 aattagctgccgactcattcacccacatgc 82
||||||||||||||||||||| ||| ||||
Sbjct: 63 aattagctgccgactcattcatccaaatgc 92
>55051_zma-miR319c:pmrd
Length = 216
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 168 ttggactgaagggtgctccct 188
|||||||||||||||||||||
Sbjct: 178 ttggactgaagggtgctccct 198
>55049_zma-miR319a:pmrd
Length = 209
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 168 ttggactgaagggtgctccct 188
|||||||||||||||||||||
Sbjct: 171 ttggactgaagggtgctccct 191
>54469_sbi-miR319b:pmrd
Length = 179
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 168 ttggactgaagggtgctccct 188
|||||||||||||||||||||
Sbjct: 158 ttggactgaagggtgctccct 178
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 14 gagcgtccttcagtccactcatgggcggtgctaggg-tcgaattagctgccgactcattc 72
|||| ||||||||||||||||||| ||| |||| | | |||||||||||||||||||
Sbjct: 1 gagcttccttcagtccactcatggacgggcgaagggtttggattagctgccgactcattc 60
Query: 73 a 73
|
Sbjct: 61 a 61
>51709_ptc-miR319c:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 2e-04
Identities = 55/65 (84%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 10 aagagagcgtccttcagtccactcatgggcggtgctaggg-tcgaattagctgccgactc 68
|||||||| | ||||||||||||||||| ||| |||| | | |||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatggacgggcgaagggtttggattagctgccgactc 68
Query: 69 attca 73
|||||
Sbjct: 69 attca 73
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 165 tgcttggactgaagggtgctccct 188
|||||||||||||||| |||||||
Sbjct: 165 tgcttggactgaagggagctccct 188
>48572_gma-miR319a:pmrd
Length = 207
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 10 aagagagcgtccttcagtccactcatggg 38
|||||||| | ||||||||||||||||||
Sbjct: 19 aagagagctttcttcagtccactcatggg 47
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 aattagctgccgactcattca 73
|||||||||||||||||||||
Sbjct: 62 aattagctgccgactcattca 82
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 agcagatgagtgaatgaagcgggag 138
||||||||||||||||| |||||||
Sbjct: 117 agcagatgagtgaatgatgcgggag 141
>48479_fal-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 161 tctttgcttggactgaagggtgctccctc 189
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
>48476_dso-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 161 tctttgcttggactgaagggtgctccctc 189
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 53 aattagctgccgactcattcacccacat 80
|||||||| |||||||||||| ||||||
Sbjct: 52 aattagcttccgactcattcatccacat 79
>48422_cor-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 161 tctttgcttggactgaagggtgctccctc 189
|||||| ||||||||||||| ||||||||
Sbjct: 155 tctttgattggactgaagggagctccctc 183
>48421_cmi-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 161 tctttgcttggactgaagggtgctccctc 189
|||||| ||||||||||||| ||||||||
Sbjct: 155 tctttgattggactgaagggagctccctc 183
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 161 tctttgcttggactgaagggtgctccctc 189
|||||| ||||||||||||| ||||||||
Sbjct: 44 tctttgattggactgaagggagctccctc 16
>46992_ath-miR319a:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 161 tctttgcttggactgaagggtgctccctc 189
|||||| ||||||||||||| ||||||||
Sbjct: 147 tctttgattggactgaagggagctccctc 175
>46856_ahi-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 161 tctttgcttggactgaagggtgctccctc 189
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
>46855_aha-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 161 tctttgcttggactgaagggtgctccctc 189
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
>46846_acb-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 161 tctttgcttggactgaagggtgctccctc 189
|||||| ||||||||||||| ||||||||
Sbjct: 153 tctttgattggactgaagggagctccctc 181
>48478_ech-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 161 tctttgcttggactgaagggtgctccct 188
|||||| ||||||||||||| |||||||
Sbjct: 154 tctttgattggactgaagggagctccct 181
>48429_crb-miR159:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 161 tctttgcttggactgaagggtgctccct 188
|||||| ||||||||||||| |||||||
Sbjct: 156 tctttgattggactgaagggagctccct 183
>46993_ath-miR319b:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 165 tgcttggactgaagggtgctccct 188
|||||||||||||||| |||||||
Sbjct: 149 tgcttggactgaagggagctccct 172
