miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48924_osa-miR395c:pmrd
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 gtattatcaagagttctctttaagcacttcatacgacaccattatttatagggttgttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtattatcaagagttctctttaagcacttcatacgacaccattatttatagggttgttgt 60
Query: 61 gaagtgtttggaggaactctcggtgtcat 89
|||||||||||||||||||||||||||||
Sbjct: 61 gaagtgtttggaggaactctcggtgtcat 89
>48936_osa-miR395o:pmrd
Length = 69
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 11 gagttctctttaagcacttcatacgacaccattatttatagggttgttgtgaagtgtttg 70
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 1 gagttctctttaagcacttcatacgacaccattattgttagggttgttatgaagtgtttg 60
Query: 71 gaggaactc 79
|||||||||
Sbjct: 61 gaggaactc 69
>48943_osa-miR395v:pmrd
Length = 69
Score = 91.7 bits (46), Expect = 8e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 14 ttctctttaagcacttcatacgacaccattatttatagggttgttgtgaagtgtttggag 73
|||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |
Sbjct: 4 ttctctttaagcacttcatacgacacaattatttcaagggttgttgtgaagtatttggcg 63
Query: 74 gaactc 79
||||||
Sbjct: 64 gaactc 69
>55068_zma-miR395c:pmrd
Length = 138
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 58 tgtgaagtgtttggaggaactctcggtgt 86
||||||||||||||||||||||| |||||
Sbjct: 98 tgtgaagtgtttggaggaactctaggtgt 126
>48935_osa-miR395n:pmrd
Length = 66
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 43 tatttatagggttgttgtgaagtgtttggaggaactc 79
|||||| || ||||||||||||||||||| |||||||
Sbjct: 30 tatttagagagttgttgtgaagtgtttgggggaactc 66
>48928_osa-miR395g:pmrd
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 57 ttgtgaagtgtttggaggaactctcggtgtcat 89
||||||||||||||| |||||||||| ||||||
Sbjct: 54 ttgtgaagtgtttgggggaactctcgatgtcat 86
>55070_zma-miR395e:pmrd
Length = 257
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 gtgaagtgtttggaggaactctcggtgt 86
|||||||||||||||||||||| |||||
Sbjct: 1 gtgaagtgtttggaggaactctaggtgt 28
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tgtgaagtgtttggaggaactct 80
|||||||||||||||||||||||
Sbjct: 164 tgtgaagtgtttggaggaactct 186
>55067_zma-miR395b:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 56 gttgtgaagtgtttggaggaactctcggtgtcat 89
|||||||||||||||| |||||||| ||| ||||
Sbjct: 72 gttgtgaagtgtttgggggaactcttggtatcat 105
>55066_zma-miR395a:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 59 gtgaagtgtttggaggaactctcggtgtca 88
||||||||||||| |||||||| |||||||
Sbjct: 110 gtgaagtgtttgggggaactctgggtgtca 139
>54860_vvi-miR395g:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 60 tgaagtgtttggaggaactctcggtgtcat 89
|||||||||||| ||||||| |||||||||
Sbjct: 57 tgaagtgtttgggggaactcccggtgtcat 86
>54483_sbi-miR395k:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tgtgaagtgtttggaggaactc 79
||||||||||||||||||||||
Sbjct: 59 tgtgaagtgtttggaggaactc 80
>48940_osa-miR395s:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttgtgaagtgtttggaggaactctcg 82
||||||||||||||| ||||||||||
Sbjct: 54 ttgtgaagtgtttgggggaactctcg 79
>55069_zma-miR395d:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tgtgaagtgtttggaggaact 78
|||||||||||||||||||||
Sbjct: 61 tgtgaagtgtttggaggaact 81
>54476_sbi-miR395d:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 ttgtgaagtgtttggaggaactctcggtg 85
||||||||||||||| |||||||| ||||
Sbjct: 63 ttgtgaagtgtttgggggaactcttggtg 91
>48926_osa-miR395e:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 tgtgaagtgtttggaggaactctcg 82
|||||||||||||| ||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactctcg 81
>48925_osa-miR395d:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 tgtgaagtgtttggaggaactctcg 82
|||||||||||||| ||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactctcg 81
>54477_sbi-miR395e:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ttgtgaagtgtttggaggaactct 80
||||||||||||||| ||||||||
Sbjct: 64 ttgtgaagtgtttgggggaactct 87
>54475_sbi-miR395c:pmrd
Length = 208
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ttgtgaagtgtttggaggaactct 80
||||||||||||||| ||||||||
Sbjct: 19 ttgtgaagtgtttgggggaactct 42
>54474_sbi-miR395b:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ttgtgaagtgtttggaggaactct 80
||||||||||||||| ||||||||
Sbjct: 64 ttgtgaagtgtttgggggaactct 87
>48931_osa-miR395j:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 58 tgtgaagtgtttggaggaactctcggtg 85
|||||||||||||| |||||||| ||||
Sbjct: 81 tgtgaagtgtttgggggaactctaggtg 108
>48923_osa-miR395b:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 53 gttgttgtgaagtgtttggaggaactct 80
||||| ||||||||||||| ||||||||
Sbjct: 50 gttgtcgtgaagtgtttgggggaactct 77
