miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;AF402959.1/7545-7457 4530:Oryza sativa (rice)
Length = 89
Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 gtattatcaagagttctctttaagcacttcatacgacaccattatttatagggttgttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtattatcaagagttctctttaagcacttcatacgacaccattatttatagggttgttgt 60
Query: 61 gaagtgtttggaggaactctcggtgtcat 89
|||||||||||||||||||||||||||||
Sbjct: 61 gaagtgtttggaggaactctcggtgtcat 89
>RF00451;mir-395;AP008215.1/6552465-6552377 39947:Oryza sativa
Japonica Group
Length = 89
Score = 103 bits (52), Expect = 4e-22
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 14 ttctctttaagcacttcatacgacaccattatttatagggttgttgtgaagtgtttggag 73
|||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |
Sbjct: 14 ttctctttaagcacttcatacgacacaattatttcaagggttgttgtgaagtatttggcg 73
Query: 74 gaactctcggtgtcat 89
|||||||| |||||||
Sbjct: 74 gaactctctgtgtcat 89
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 65.9 bits (33), Expect = 8e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 43 tatttatagggttgttgtgaagtgtttggaggaactctcggtgtc 87
|||||| || ||||||||||||||||||| |||||||||||||||
Sbjct: 40 tatttagagagttgttgtgaagtgtttgggggaactctcggtgtc 84
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 ttgtgaagtgtttggaggaactctcggtg 85
||||||||||||||| |||||||||||||
Sbjct: 80 ttgtgaagtgtttgggggaactctcggtg 108
>RF00451;mir-395;ABXC01004559.1/91066-91167 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tgtgaagtgtttggaggaactct 80
|||||||||||||||||||||||
Sbjct: 71 tgtgaagtgtttggaggaactct 93
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 58 tgtgaagtgtttggaggaactctcggt 84
|||||||||||||| ||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactctcggt 83
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 60 tgaagtgtttggaggaactctcggtgtcat 89
|||||||||||| |||||||| ||||||||
Sbjct: 50 tgaagtgtttgggggaactcttggtgtcat 79
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 60 tgaagtgtttggaggaactctcggtgtcat 89
|||||||||||| |||||||| ||||||||
Sbjct: 57 tgaagtgtttgggggaactcttggtgtcat 86
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 60 tgaagtgtttggaggaactctcggtgtcat 89
|||||||||||| ||||||| |||||||||
Sbjct: 59 tgaagtgtttgggggaactcccggtgtcat 88
>RF00451;mir-395;AP008210.1/32656979-32657064 39947:Oryza sativa
Japonica Group
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 55 tgttgtgaagtgtttggaggaactctcggtgtca 88
||||||||||||||||||| | |||| |||||||
Sbjct: 52 tgttgtgaagtgtttggagtagctcttggtgtca 85
