miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48946_osa-miR396b:pmrd
Length = 116
Score = 230 bits (116), Expect = 2e-61
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 1 ctttgtggtcttccacagctttcttgaactgcatctttgagagagattagcatccctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtggtcttccacagctttcttgaactgcatctttgagagagattagcatccctatg 60
Query: 61 tgtggattttgcttgcacgagtgtgcagttcaataaagctgtgggaaattacagag 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtggattttgcttgcacgagtgtgcagttcaataaagctgtgggaaattacagag 116
>55073_zma-miR396b:pmrd
Length = 136
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 ctttgtggtcttccacagctttcttgaactgcatct 36
||||||| ||||||||||||||||||||||||||||
Sbjct: 11 ctttgtgatcttccacagctttcttgaactgcatct 46
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 tgcagttcaataaagctgtgggaaa 108
|||||||||||||||||||||||||
Sbjct: 95 tgcagttcaataaagctgtgggaaa 119
>54645_sof-miR396:pmrd
Length = 134
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 ctttgtggtcttccacagctttcttgaactgcatct 36
||||||| ||||||||||||||||||||||||||||
Sbjct: 11 ctttgtgatcttccacagctttcttgaactgcatct 46
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 83 gtgcagttcaataaagctgtgggaaa 108
||||||||||||||||||||||||||
Sbjct: 92 gtgcagttcaataaagctgtgggaaa 117
>54486_sbi-miR396b:pmrd
Length = 128
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 ctttgtggtcttccacagctttcttgaactgcatct 36
||||||| ||||||||||||||||||||||||||||
Sbjct: 11 ctttgtgatcttccacagctttcttgaactgcatct 46
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 83 gtgcagttcaataaagctgtgggaaa 108
||||||||||||||||||||||||||
Sbjct: 86 gtgcagttcaataaagctgtgggaaa 111
>48945_osa-miR396a:pmrd
Length = 154
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 ctttgtggtcttccacagctttcttgaactgca 33
||||||| |||||||||||||||||||||||||
Sbjct: 1 ctttgtgatcttccacagctttcttgaactgca 33
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 85 gcagttcaataaagctgtgggaaattacagag 116
|||||||||||||||||||||||||| |||||
Sbjct: 123 gcagttcaataaagctgtgggaaattgcagag 154
>54485_sbi-miR396a:pmrd
Length = 125
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 85 gcagttcaataaagctgtgggaaattacagag 116
|||||||||||||||||||||||||| |||||
Sbjct: 85 gcagttcaataaagctgtgggaaattgcagag 116
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gtcttccacagctttcttgaactgcat 34
|||||||||||||||||||||||||||
Sbjct: 18 gtcttccacagctttcttgaactgcat 44
>55079_zma-miR396h:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcatc 35
|||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcatc 28
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 85 gcagttcaataaagctgtgggaaat 109
|||||||||||||||||||||||||
Sbjct: 92 gcagttcaataaagctgtgggaaat 116
>55074_zma-miR396c:pmrd
Length = 104
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gtcttccacagctttcttgaactgcat 34
|||||||||||||||||||||||||||
Sbjct: 1 gtcttccacagctttcttgaactgcat 27
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 gcagttcaataaagctgtgggaaa 108
||||||||||||||||||||||||
Sbjct: 80 gcagttcaataaagctgtgggaaa 103
>55072_zma-miR396a:pmrd
Length = 137
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gtcttccacagctttcttgaactgcat 34
|||||||||||||||||||||||||||
Sbjct: 18 gtcttccacagctttcttgaactgcat 44
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 gcagttcaataaagctgtgggaaa 108
||||||||||||||||||||||||
Sbjct: 97 gcagttcaataaagctgtgggaaa 120
>48578_gma-miR396a:pmrd
Length = 140
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcatc 35
|||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatc 45
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gttcaataaagctgtgggaa 107
||||||||||||||||||||
Sbjct: 103 gttcaataaagctgtgggaa 122
>55083_zma-miR396l:pmrd
Length = 97
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgcatct 36
||||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatct 26
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 84 tgcagttcaataaagctgtggga 106
|||||||||||||||||||||||
Sbjct: 75 tgcagttcaataaagctgtggga 97
>54871_vvi-miR396d:pmrd
Length = 120
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gttcaataaagctgtgggaa 107
||||||||||||||||||||
Sbjct: 90 gttcaataaagctgtgggaa 109
>48680_lja-miR396:pmrd
Length = 108
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgcat 34
||||||||||||||||||||||||||
Sbjct: 14 tcttccacagctttcttgaactgcat 39
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gttcaataaagctgtgggaa 107
||||||||||||||||||||
Sbjct: 76 gttcaataaagctgtgggaa 95
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 7 tcttccacagctttcttgaactgca 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gttcaataaagctgtgggaa 107
||||||||||||||||||||
Sbjct: 104 gttcaataaagctgtgggaa 123
>51735_ptc-miR396b:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gttcaataaagctgtgggaa 107
||||||||||||||||||||
Sbjct: 106 gttcaataaagctgtgggaa 125
>51734_ptc-miR396a:pmrd
Length = 123
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gttcaataaagctgtgggaa 107
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>48485_gcl-miR396a:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaactgcatc 35
|||||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatc 77
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 16 tcttccacagctttcttgaactgca 40
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gttcaataaagctgtgggaa 107
||||||||||||||||||||
Sbjct: 130 gttcaataaagctgtgggaa 149
>47008_ath-miR396a:pmrd
Length = 151
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tcttccacagctttcttgaactgca 33
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 gttcaataaagctgtgggaa 107
||||||||||||||||||||
Sbjct: 123 gttcaataaagctgtgggaa 142
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgcat 34
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 gcagttcaataaagctgtggga 106
||||||||||||||||||||||
Sbjct: 77 gcagttcaataaagctgtggga 98
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgcat 34
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>54870_vvi-miR396c:pmrd
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 tgtggtcttccacagctttcttgaactg 31
|||| |||||||||||||||||||||||
Sbjct: 4 tgtgatcttccacagctttcttgaactg 31
>46887_aqc-miR396a:pmrd
Length = 122
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgcat 34
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 gttcaataaagctgtgggaaa 108
|||||||||||||||||||||
Sbjct: 102 gttcaataaagctgtgggaaa 122
>55082_zma-miR396k:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 84 tgcagttcaataaagctgtggga 106
|||||||||||||||||||||||
Sbjct: 76 tgcagttcaataaagctgtggga 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgc 32
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>48508_ghr-miR396c:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgca 33
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48507_ghr-miR396b:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgca 33
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48486_gcl-miR396b:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactgcatc 35
||||| |||||||||||||||||||
Sbjct: 1 ttccatagctttcttgaactgcatc 25
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
