miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48954_osa-miR396f:pmrd
Length = 176
Score = 349 bits (176), Expect = 4e-97
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 1 gccatgctctccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccatgctctccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatat 60
Query: 61 tgttctagatcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgttctagatcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatg 120
Query: 121 cgcatctggatccccatcttgttgatagttcaagaaagtccttggaaaacatggtg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgcatctggatccccatcttgttgatagttcaagaaagtccttggaaaacatggtg 176
>48953_osa-miR396f:pmrd
Length = 176
Score = 349 bits (176), Expect = 4e-97
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 1 gccatgctctccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccatgctctccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatat 60
Query: 61 tgttctagatcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgttctagatcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatg 120
Query: 121 cgcatctggatccccatcttgttgatagttcaagaaagtccttggaaaacatggtg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgcatctggatccccatcttgttgatagttcaagaaagtccttggaaaacatggtg 176
>48952_osa-miR396f:pmrd
Length = 176
Score = 349 bits (176), Expect = 4e-97
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 1 gccatgctctccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccatgctctccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatat 60
Query: 61 tgttctagatcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgttctagatcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatg 120
Query: 121 cgcatctggatccccatcttgttgatagttcaagaaagtccttggaaaacatggtg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgcatctggatccccatcttgttgatagttcaagaaagtccttggaaaacatggtg 176
>48797_oru-miR396:pmrd
Length = 178
Score = 349 bits (176), Expect = 4e-97
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 1 gccatgctctccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gccatgctctccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatat 61
Query: 61 tgttctagatcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgttctagatcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatg 121
Query: 121 cgcatctggatccccatcttgttgatagttcaagaaagtccttggaaaacatggtg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cgcatctggatccccatcttgttgatagttcaagaaagtccttggaaaacatggtg 177
>48480_far-miR396:pmrd
Length = 99
Score = 75.8 bits (38), Expect = 1e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 gccatgctctccacaggctttcttgaactgtgaactcg 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gccatgctctccacaggctttcttgaactgtgaactcg 46
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 148 gttcaagaaagtccttggaaaacatg 173
||||||||||||||||||||||||||
Sbjct: 65 gttcaagaaagtccttggaaaacatg 90
>48951_osa-miR396e:pmrd
Length = 184
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 3 catgctctccacaggctttcttgaactgtgaactcgtg 40
|||||| |||||||||||||||||||||||||||||||
Sbjct: 6 catgctttccacaggctttcttgaactgtgaactcgtg 43
>48950_osa-miR396e:pmrd
Length = 184
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 3 catgctctccacaggctttcttgaactgtgaactcgtg 40
|||||| |||||||||||||||||||||||||||||||
Sbjct: 6 catgctttccacaggctttcttgaactgtgaactcgtg 43
>48949_osa-miR396e:pmrd
Length = 184
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 3 catgctctccacaggctttcttgaactgtgaactcgtg 40
|||||| |||||||||||||||||||||||||||||||
Sbjct: 6 catgctttccacaggctttcttgaactgtgaactcgtg 43
>48948_osa-miR396d:pmrd
Length = 142
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 3 catgctctccacaggctttcttgaactgtgaactcgtg 40
|||||| |||||||||||||||||||||||||||||||
Sbjct: 14 catgctttccacaggctttcttgaactgtgaactcgtg 51
>48651_hvu-miR396:pmrd
Length = 107
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 gccatgctctccacaggctttcttgaactgtgaactcg 38
||||||||||||||||||||||||||||||| ||||||
Sbjct: 4 gccatgctctccacaggctttcttgaactgtcaactcg 41
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 141 gttgatagttcaagaaagtccttggaaaacatg 173
|||||| ||||||||||||||||||||||||||
Sbjct: 70 gttgatggttcaagaaagtccttggaaaacatg 102
>55085_zma-miR396n:pmrd
Length = 186
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 10 tccacaggctttcttgaactgtgaactcgtg 40
|||||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcgtg 33
>55084_zma-miR396m:pmrd
Length = 227
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 10 tccacaggctttcttgaactgtgaactcgtg 40
|||||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcgtg 33
>55076_zma-miR396e:pmrd
Length = 186
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 10 tccacaggctttcttgaactgtgaactcgtg 40
|||||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcgtg 33
>55075_zma-miR396d:pmrd
Length = 186
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 10 tccacaggctttcttgaactgtgaactcgtg 40
|||||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcgtg 33
>54488_sbi-miR396e:pmrd
Length = 189
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 10 tccacaggctttcttgaactgtgaactcgtg 40
|||||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcgtg 33
