miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AP004043.3/15829-15652 39947:Oryza sativa Japonica
Group
Length = 178
Score = 349 bits (176), Expect = 8e-96
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 1 gccatgctctccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gccatgctctccacaggctttcttgaactgtgaactcgtgtgtgcatgctcctcatatat 61
Query: 61 tgttctagatcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgttctagatcccatgcatgatgcatatcgatcgatctgatctgaattaggtcatcgatg 121
Query: 121 cgcatctggatccccatcttgttgatagttcaagaaagtccttggaaaacatggtg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cgcatctggatccccatcttgttgatagttcaagaaagtccttggaaaacatggtg 177
>RF00648;MIR396;EU950590.1/116-359 4577:Zea mays
Length = 244
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 3 catgctctccacaggctttcttgaactgtgaactcgtg 40
|||||| |||||||||||||||||||||||||||||||
Sbjct: 4 catgctttccacaggctttcttgaactgtgaactcgtg 41
>RF00648;MIR396;ABXC01003010.1/105635-105521 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 gccatgctctccacaggctttcttgaactgtgaactcg 38
|||||| |||||||||||||||||||||||||||||||
Sbjct: 2 gccatgttctccacaggctttcttgaactgtgaactcg 39
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 140 tgttgatagttcaagaaagtccttggaaaacatgg 174
||||||| |||||||||||||||||||||||||||
Sbjct: 78 tgttgatggttcaagaaagtccttggaaaacatgg 112
>RF00648;MIR396;ABXC01004473.1/64146-64350 4558:Sorghum bicolor
(sorghum)
Length = 205
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 3 catgctctccacaggctttcttgaactgtgaactcgtg 40
|||||| |||||||||||||||||||||||||||||||
Sbjct: 4 catgctttccacaggctttcttgaactgtgaactcgtg 41
>RF00648;MIR396;AL732351.2/3841-4022 4530:Oryza sativa (rice)
Length = 182
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 3 catgctctccacaggctttcttgaactgtgaactcgtg 40
|||||| |||||||||||||||||||||||||||||||
Sbjct: 4 catgctttccacaggctttcttgaactgtgaactcgtg 41
>RF00648;MIR396;AC226038.1/95545-95657 4641:Musa acuminata
Length = 113
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 3 catgctctccacaggctttcttgaactgtgaact 36
|||| |||||||||||||||||||||||||||||
Sbjct: 4 catgttctccacaggctttcttgaactgtgaact 37
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 140 tgttgatagttcaagaaagtccttggaaaacatg 173
|||||| |||||||||||||||||||||||||||
Sbjct: 76 tgttgacagttcaagaaagtccttggaaaacatg 109
