miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AP005783.3/58390-58303 39947:Oryza sativa Japonica
Group
Length = 88
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ggagttcctacaggggcgagctgggaacacacggtgatgaggcggtctggtctttcgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagttcctacaggggcgagctgggaacacacggtgatgaggcggtctggtctttcgtgt 60
Query: 61 gttctcaggtcgcccctgccgggactct 88
||||||||||||||||||||||||||||
Sbjct: 61 gttctcaggtcgcccctgccgggactct 88
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 51 tctttcgtgtgttctcaggtcgcccctgccggg 83
|||||| ||||||||||||||||||||||||||
Sbjct: 101 tctttcatgtgttctcaggtcgcccctgccggg 133
>RF00695;MIR398;ABIM01009168.1/9183-9310 3649:Carica papaya (papaya)
Length = 128
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 54 ttcgtgtgttctcaggtcgcccctgccggga 84
|||||||||||||||||||||||||| ||||
Sbjct: 94 ttcgtgtgttctcaggtcgcccctgctggga 124
>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
alba
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 tgtgttctcaggtcgcccctgccggg 83
||||||||||||||||||||||||||
Sbjct: 51 tgtgttctcaggtcgcccctgccggg 76
>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
trichocarpa
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 tgtgttctcaggtcgcccctgccggg 83
||||||||||||||||||||||||||
Sbjct: 56 tgtgttctcaggtcgcccctgccggg 81
>RF00695;MIR398;CU225561.1/49-129 80863:Populus tremula x Populus
alba
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 tgttctcaggtcgcccctgccggg 83
||||||||||||||||||||||||
Sbjct: 53 tgttctcaggtcgcccctgccggg 76
>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
(barrel medic)
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tgtgttctcaggtcgcccctgc 79
||||||||||||||||||||||
Sbjct: 67 tgtgttctcaggtcgcccctgc 88
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tgtgttctcaggtcgcccctgc 79
||||||||||||||||||||||
Sbjct: 60 tgtgttctcaggtcgcccctgc 81
