miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>54376_pvi-miR444:pmrd
          Length = 127

 Score =  168 bits (85), Expect = 7e-43
 Identities = 106/113 (93%)
 Strand = Plus / Plus

                                                                       
Query: 22  caagctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatg 81
           |||||||||| ||||||||||||||||||||||||||| ||||||  | ||||||| |||
Sbjct: 15  caagctagaggcagcaactgcatatcttgcaagaaaattggttttcagaccatacctatg 74

                                                                
Query: 82  attttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcc 134
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 75  attttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 127



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 14  ggaggcggcaagctagagacagcaactgcatatcttgcaagaaaatc 60
           |||||| ||||||| |||||| |||||||| | ||||||||||||||
Sbjct: 120 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaatc 74




>49007_osa-miR444f:pmrd
          Length = 154

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                            
Query: 79  atgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcc 127
           |||| ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 105 atgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 153



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 14  ggaggcggcaagctagagacagcaactgcatatcttgcaagaaa 57
           |||||| ||||||| ||| || |||||||| | |||||||||||
Sbjct: 153 ggaggcagcaagcttgaggcaacaactgcacaacttgcaagaaa 110




>48798_oru-miR444:pmrd
          Length = 165

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                            
Query: 79  atgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcc 127
           |||| ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 110 atgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 14  ggaggcggcaagctagagacagcaactgcatatcttgcaagaaa 57
           |||||| ||||||| ||| || |||||||| | |||||||||||
Sbjct: 158 ggaggcagcaagcttgaggcaacaactgcacaacttgcaagaaa 115




>54691_tae-miR444:pmrd
          Length = 426

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 84  tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcca 135
           |||||||||||   |||||||| || ||||||||||||||||||||||||||
Sbjct: 134 tttcttgcaagtcatgcagttgctgcctcaagcttgctgcctccctttgcca 185



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 14  ggaggcggcaagctagagacagcaactgcatatcttgcaagaaa 57
           |||||| ||||||| ||| ||||||||||||  |||||||||||
Sbjct: 177 ggaggcagcaagcttgaggcagcaactgcatgacttgcaagaaa 134




>54742_tae-miR2024a:pmrd
          Length = 118

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 84  tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcc 127
           ||||| ||||| |||||||||| |||||||||||||||| ||||
Sbjct: 75  tttctcgcaagttgtgcagttgctgtctcaagcttgctgactcc 118



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 21  gcaagctagagacagcaactgcatatcttgcaagaaa 57
           ||||||| ||||||||||||||| | ||||| |||||
Sbjct: 111 gcaagcttgagacagcaactgcacaacttgcgagaaa 75




>55114_zma-miR444a:pmrd
          Length = 138

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 110 ctcaagcttgctgcctccctttgcca 135
           ||||||||||||||||||||||||||
Sbjct: 8   ctcaagcttgctgcctccctttgcca 33




>54743_tae-miR2024b:pmrd
          Length = 142

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 14  ggaggcggcaagctagagacagcaactgcatatcttgcaagaaa 57
           |||||| ||||||| ||| ||||||||||||  |||||||||||
Sbjct: 142 ggaggcagcaagcttgaggcagcaactgcatgacttgcaagaaa 99



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 84  tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcc 127
           |||||||||||   |||||||| || ||||||||||||||||||
Sbjct: 99  tttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 142




>55115_zma-miR444b:pmrd
          Length = 174

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 110 ctcaagcttgctgcctccctttgcca 135
           ||||||||| ||||||||||||||||
Sbjct: 8   ctcaagcttcctgcctccctttgcca 33