miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 254 bits (128), Expect = 3e-67
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 7 tgcaagtggaggcggcaagctagagacagcaactgcatatcttgcaagaaaatcggtttt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaagtggaggcggcaagctagagacagcaactgcatatcttgcaagaaaatcggtttt 60
Query: 67 atggccataccgatgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcctc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atggccataccgatgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcctc 120
Query: 127 cctttgcc 134
||||||||
Sbjct: 121 cctttgcc 128
Score = 67.9 bits (34), Expect = 3e-11
Identities = 94/114 (82%)
Strand = Plus / Minus
Query: 14 ggaggcggcaagctagagacagcaactgcatatcttgcaagaaaatcggttttatggcca 73
|||||| ||||||| |||||| |||||||| | |||||||||||||| ||||||||
Sbjct: 121 ggaggcagcaagcttgagacaacaactgcacagcttgcaagaaaatcatcggtatggcca 62
Query: 74 taccgatgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcc 127
|| |||||||||||||| | |||||||| |||||| ||||||| ||||||
Sbjct: 61 taaaaccgattttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 165 bits (83), Expect = 2e-40
Identities = 119/130 (91%), Gaps = 2/130 (1%)
Strand = Plus / Plus
Query: 7 tgcaagtggaggcggcaagctagagacagcaactgcatatcttgcaagaaaa--tcggtt 64
||||||||| ||| ||||||||||| ||||||||||||| |||||||||||| ||||||
Sbjct: 1 tgcaagtggcggcagcaagctagaggcagcaactgcataccttgcaagaaaaaatcggtt 60
Query: 65 ttatggccataccgatgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcc 124
|| | | | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 ttgttgacgtaccgatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 120
Query: 125 tccctttgcc 134
||||||||||
Sbjct: 121 tccctttgcc 130
Score = 54.0 bits (27), Expect = 5e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 14 ggaggcggcaagctagagacagcaactgcatatcttgcaagaaaatc 60
|||||| ||||||| |||||| |||||||| | ||||||||||||||
Sbjct: 123 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaatc 77
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 83 ttttcttgcaagctgtgcagttgttgtctcaagcttgctgcc 124
|||||||||||| | |||||||| || ||| |||||||||||
Sbjct: 52 ttttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 157 bits (79), Expect = 5e-38
Identities = 103/111 (92%)
Strand = Plus / Plus
Query: 24 agctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatgat 83
|||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct: 18 agctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataat 77
Query: 84 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcc 134
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 14 ggaggcggcaagctagagacagcaactgcatatcttgcaagaaaat 59
|||||| ||||||| |||||| |||||||| | |||||||||||||
Sbjct: 121 ggaggcagcaagcttgagacaacaactgcacaacttgcaagaaaat 76
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 85.7 bits (43), Expect = 1e-16
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 84 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcc 134
||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 167
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 73.8 bits (37), Expect = 5e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 79 atgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcc 127
|||| ||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 110 atgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 72 cataccgatgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcc 127
|||||||||||| |||||||||| | |||||||| || ||||||||||||||||||
Sbjct: 67 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
Score = 54.0 bits (27), Expect = 5e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 14 ggaggcggcaagctagagacagcaactgcatatcttgcaagaa 56
|||||| ||||||| ||| ||||||||||||| ||||||||||
Sbjct: 122 ggaggcagcaagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 69.9 bits (35), Expect = 9e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 84 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcc 134
||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgcc 173
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 84 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcc 124
||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 61.9 bits (31), Expect = 2e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 72 cataccgatgattttcttgcaagctgtgcagttgttgtctcaagcttgctgcctcccttt 131
|||||||||| | ||||||||| | |||||||| || ||||||||| ||||||||||||
Sbjct: 67 cataccgatggtgctcttgcaagttatgcagttgctgcctcaagcttcctgcctcccttt 126
Query: 132 gcc 134
|||
Sbjct: 127 gcc 129
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 86 tcttgcaagctgtgcagttgttgtctcaagcttgctgcc 124
||||||| ||| ||||||||||||||| |||||||||||
Sbjct: 49 tcttgcatgctatgcagttgttgtctcgagcttgctgcc 11
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 14 ggaggcggcaagctagagacagcaactgcatatcttgcaaga 55
|||||| | ||||| ||| ||||||||||||| |||||||||
Sbjct: 122 ggaggcaggaagcttgaggcagcaactgcataacttgcaaga 81
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 98 tgcagttgttgtctcaagcttgctgcctccctttgcc 134
|||||||| || |||||||||||||||||||||||||
Sbjct: 98 tgcagttgctgcctcaagcttgctgcctccctttgcc 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 14 ggaggcggcaagctagagacagcaactgcatatcttgc 51
|||||| ||||||| ||| ||||||||||||| |||||
Sbjct: 127 ggaggcagcaagcttgaggcagcaactgcataacttgc 90
