miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49006_osa-miR444e:pmrd
Length = 140
Score = 278 bits (140), Expect = 1e-75
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 1 ggttttgtaaccaggggcaataagctagaggcaccaactgcataacttgcgagaaacttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttttgtaaccaggggcaataagctagaggcaccaactgcataacttgcgagaaacttg 60
Query: 61 ttggatgatgatcttgccaatgattttgccgcaagttatgcagttgctgcctcaagctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttggatgatgatcttgccaatgattttgccgcaagttatgcagttgctgcctcaagctta 120
Query: 121 ctgcctttgtttgctaaacc 140
||||||||||||||||||||
Sbjct: 121 ctgcctttgtttgctaaacc 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 90 cgcaagttatgcagttgctgcctcaagcttactgcc 125
||||||||||||||||| |||||| |||||| ||||
Sbjct: 51 cgcaagttatgcagttggtgcctctagcttattgcc 16
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 16 ggcaataagctagaggcaccaactgcataacttgcg 51
|||| |||||| |||||| |||||||||||||||||
Sbjct: 125 ggcagtaagcttgaggcagcaactgcataacttgcg 90
>48319_bdi-miR444:pmrd
Length = 110
Score = 111 bits (56), Expect = 1e-25
Identities = 90/100 (90%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 25 ctagaggcaccaactgcataacttgcgagaaacttgttggatgatgatcttgccaatgat 84
||||||||| ||||| ||||||||||| || ||||||||||||||| | ||||||||||
Sbjct: 12 ctagaggcagcaactccataacttgcggaaagcttgttggatgatgaccatgccaatgat 71
Query: 85 tttgccgcaagttatgcagttgctgcctcaagcttactgc 124
||| ||| ||||||||||||||||||||||||||| ||||
Sbjct: 72 tttaccg-aagttatgcagttgctgcctcaagcttgctgc 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 89 ccgcaagttatgcagttgctgcctc 113
|||||||||||| ||||||||||||
Sbjct: 39 ccgcaagttatggagttgctgcctc 15
>54743_tae-miR2024b:pmrd
Length = 142
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 91 gcaagttatgcagttgctgcctcaagcttactgcct 126
|||||| |||||||||||||||||||||| ||||||
Sbjct: 105 gcaagtcatgcagttgctgcctcaagcttgctgcct 140
>54691_tae-miR444:pmrd
Length = 426
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 91 gcaagttatgcagttgctgcctcaagcttactgcct 126
|||||| |||||||||||||||||||||| ||||||
Sbjct: 140 gcaagtcatgcagttgctgcctcaagcttgctgcct 175
>49007_osa-miR444f:pmrd
Length = 154
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 91 gcaagttatgcagttgctgcctcaagcttactgcct 126
||||||| |||||||| |||||||||||| ||||||
Sbjct: 116 gcaagttgtgcagttgttgcctcaagcttgctgcct 151
>48798_oru-miR444:pmrd
Length = 165
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 91 gcaagttatgcagttgctgcctcaagcttactgcct 126
||||||| |||||||| |||||||||||| ||||||
Sbjct: 121 gcaagttgtgcagttgttgcctcaagcttgctgcct 156
>54376_pvi-miR444:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 7e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 22 aagctagaggcaccaactgcataacttgcgagaaa 56
|||||||||||| |||||||||| ||||| |||||
Sbjct: 16 aagctagaggcagcaactgcatatcttgcaagaaa 50
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 91 gcaagttatgcagttgctgcctcaagctt 119
||||| ||||||||||||||||| |||||
Sbjct: 44 gcaagatatgcagttgctgcctctagctt 16
>54742_tae-miR2024a:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 90 cgcaagttatgcagttgctgcctcaagctt 119
|||||||| ||||||||||| |||||||||
Sbjct: 80 cgcaagttgtgcagttgctgtctcaagctt 109
