miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 95.6 bits (48), Expect = 2e-19
Identities = 82/92 (89%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 35 caactgcataacttgcgagaaacttgttggatgatgatcttgccaatgattttgccgcaa 94
|||||||||||||||||| |||||||||||| ||| | | || |||||||| ||||||
Sbjct: 35 caactgcataacttgcgataaacttgttggaccatggtgt-gctgatgattttaccgcaa 93
Query: 95 gttatgcagttgctgcctcaagcttactgcct 126
||||||||||||||||||||||||| ||||||
Sbjct: 94 gttatgcagttgctgcctcaagcttgctgcct 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 22 aagctagaggcaccaactgcataacttgcg 51
||||| |||||| |||||||||||||||||
Sbjct: 118 aagcttgaggcagcaactgcataacttgcg 89
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 73.8 bits (37), Expect = 6e-13
Identities = 89/105 (84%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 22 aagctagaggcaccaactgcataacttgcgagaaacttgttggatgatgatcttgccaat 81
|||||||||| ||||||||||| |||| ||||| ||||||| ||| |||| | || ||
Sbjct: 17 aagctagaggtggcaactgcataatttgcaagaaa-ttgttggctgaagatcataccgat 75
Query: 82 gattttgccgcaagttatgcagttgctgcctcaagcttactgcct 126
||| || ||||||||||||||||||||||||||||| ||||||
Sbjct: 76 gatattcttgcaagttatgcagttgctgcctcaagcttgctgcct 120
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 22 aagctagaggcaccaactgcataacttgcgagaa 55
||||| |||||| |||||||||||||||| ||||
Sbjct: 113 aagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 91 gcaagttatgcagttgctgcctcaagcttactgcct 126
||||||||||||||||||||||||||||| ||||||
Sbjct: 85 gcaagttatgcagttgctgcctcaagcttcctgcct 120
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 91 gcaagttatgcagttgctgcctcaagcttactgcct 126
||||||| |||||||| |||||||||||| ||||||
Sbjct: 123 gcaagttgtgcagttgttgcctcaagcttgctgcct 158
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 99 tgcagttgctgcctcaagcttactgcct 126
||||||||||||||||||||| ||||||
Sbjct: 137 tgcagttgctgcctcaagcttgctgcct 164
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 91 gcaagttatgcagttgctgcctcaagcttactgcct 126
||||||| |||||||| |||||||||||| ||||||
Sbjct: 121 gcaagttgtgcagttgttgcctcaagcttgctgcct 156
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 91 gcaagttatgcagttgctgcctcaagcttactgcc 125
||||||| |||||||| |||||||||||| |||||
Sbjct: 195 gcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 91 gcaagttatgcagttgctgcctcaagcttactgcc 125
||||| ||||||||||||||||| ||||| |||||
Sbjct: 45 gcaaggtatgcagttgctgcctctagcttgctgcc 11
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 22 aagctagaggcaccaactgcataacttgcgagaaa 56
|||||||||||| |||||||||| ||||| |||||
Sbjct: 17 aagctagaggcagcaactgcataccttgcaagaaa 51
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 23 agctagaggcaccaactgcataacttgcgagaaa 56
||||||||||| |||||||||| ||||| |||||
Sbjct: 18 agctagaggcagcaactgcatatcttgcaagaaa 51
