miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49011_osa-miR445d:pmrd
Length = 312
Score = 618 bits (312), Expect = e-178
Identities = 312/312 (100%)
Strand = Plus / Plus
Query: 1 tggccaaaatttagtccctgtcacatcagatgttatgacactaattaaaagtattaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggccaaaatttagtccctgtcacatcagatgttatgacactaattaaaagtattaaaca 60
Query: 61 tagactaatgacaaaccccattccataaccctggattaattcgcgagatgaatctattga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagactaatgacaaaccccattccataaccctggattaattcgcgagatgaatctattga 120
Query: 121 gtctaattaatcaatgattagcctatgtgatgctacactaaacatgtgttaattatggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtctaattaatcaatgattagcctatgtgatgctacactaaacatgtgttaattatggat 180
Query: 181 taattaggcttaaaaattttgtctcacgaattagctctcatttatgcaattattagtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taattaggcttaaaaattttgtctcacgaattagctctcatttatgcaattattagtttt 240
Query: 241 gtaagtagtttatgtttaatatctaaattagtgtataaacatccgatgtgatagggacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtaagtagtttatgtttaatatctaaattagtgtataaacatccgatgtgatagggacta 300
Query: 301 aagttggatcca 312
||||||||||||
Sbjct: 301 aagttggatcca 312
>49008_osa-miR445a:pmrd
Length = 268
Score = 153 bits (77), Expect = 1e-37
Identities = 212/255 (83%), Gaps = 4/255 (1%)
Strand = Plus / Minus
Query: 21 tcacatcagatgttatgacactaattaaaagtattaaacatagactaatgacaaacccca 80
||||||| |||||| ||||||||| | ||||||||||||| |||||| | ||| || |
Sbjct: 268 tcacatcggatgtttatacactaatttagagtattaaacatacactaattataaaaccta 209
Query: 81 ttccataaccctggattaattcgcgagatgaatctattgagtctaattaatcaatgatta 140
||| |||||| |||| |||||||||||| |||||| ||||||||||||| | ||||||
Sbjct: 208 ttctataaccttggactaattcgcgagacgaatcttttgagtctaattacaccatgattt 149
Query: 141 gcctatgtgatgctacactaaacatgtgttaattatggattaattaggcttaaaaatttt 200
| | ||||||||||||| ||||| | | ||||||||||||||||||||||||||| ||
Sbjct: 148 gacaatgtgatgctacagtaaacttttcataattatggattaattaggcttaaaaaattc 89
Query: 201 gtctcacgaattagctctcatttatgcaattattagttttgtaagtagtttatgtttaat 260
||||| | ||||||| ||||||||| | ||||||||| | | |||| ||||||||||
Sbjct: 88 gtctcgcagattagctttcatttatgaa---attagtttttttattagtctatgtttaat 32
Query: 261 a-tctaaattagtgt 274
| || ||||||||||
Sbjct: 31 actccaaattagtgt 17
Score = 73.8 bits (37), Expect = 7e-14
Identities = 53/57 (92%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 236 gttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatgtga 291
||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 212 gttttataattagtgtatgtttaatactctaaattagtgtataaacatccgatgtga 268
Score = 44.1 bits (22), Expect = 6e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 36 tgacactaattaaaagtattaaacatagactaat 69
||||||||||| ||||||||||||||||||||
Sbjct: 15 tgacactaatttggagtattaaacatagactaat 48
>49015_osa-miR445h:pmrd
Length = 277
Score = 105 bits (53), Expect = 2e-23
Identities = 101/117 (86%)
Strand = Plus / Minus
Query: 13 agtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaatgac 72
||||||||||||||| |||||| ||||||||| | ||||||||||||| |||||| |
Sbjct: 272 agtccctgtcacatcggatgtttatacactaatttagagtattaaacatacactaattat 213
Query: 73 aaaccccattccataaccctggattaattcgcgagatgaatctattgagtctaatta 129
||| || |||| |||||| |||| |||||||||||| |||||| |||||||||||||
Sbjct: 212 aaaacctattctataaccttggactaattcgcgagacgaatcttttgagtctaatta 156
Score = 81.8 bits (41), Expect = 3e-16
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 236 gttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatgtgatag 294
||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 208 gttttataattagtgtatgtttaatactctaaattagtgtataaacatccgatgtgacag 267
Query: 295 ggact 299
|||||
Sbjct: 268 ggact 272
Score = 48.1 bits (24), Expect = 4e-06
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 10 tttagtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaat 69
|||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 3 tttagtccgtgtcacattgaatgtt-tgacactaatttggagtattaaacatagactaat 61
>49013_osa-miR445f:pmrd
Length = 305
Score = 105 bits (53), Expect = 2e-23
Identities = 101/117 (86%)
Strand = Plus / Minus
Query: 13 agtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaatgac 72
||||||||||||||| |||||| ||||||||| | ||||||||||||| |||||| |
Sbjct: 287 agtccctgtcacatcggatgtttatacactaatttagagtattaaacatacactaattat 228
Query: 73 aaaccccattccataaccctggattaattcgcgagatgaatctattgagtctaatta 129
||| || |||| |||||| |||| |||||||||||| |||||| |||||||||||||
Sbjct: 227 aaaacctattctataaccttggactaattcgcgagacgaatcttttgagtctaatta 171
Score = 81.8 bits (41), Expect = 3e-16
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 236 gttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatgtgatag 294
||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 223 gttttataattagtgtatgtttaatactctaaattagtgtataaacatccgatgtgacag 282
Query: 295 ggact 299
|||||
Sbjct: 283 ggact 287
Score = 48.1 bits (24), Expect = 4e-06
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 10 tttagtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaat 69
|||||||| ||||||||| ||||| |||| |||||| ||||||||||||||||||||
Sbjct: 18 tttagtccgtgtcacatcgaatgtt-tgacgctaatttggagtattaaacatagactaat 76
>49012_osa-miR445e:pmrd
Length = 265
Score = 103 bits (52), Expect = 8e-23
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 14 gtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaatgaca 73
|||||||||||||| |||||| ||||||||| | ||||||||||||| |||||| | |
Sbjct: 265 gtccctgtcacatcggatgtttatacactaatttagagtattaaacatacactaattata 206
Query: 74 aaccccattccataaccctggattaattcgcgagatgaatctattgagtctaatta 129
|| || |||| |||||| |||| |||||||||||| |||||| |||||||||||||
Sbjct: 205 aaacctattctataaccttggactaattcgcgagacgaatcttttgagtctaatta 150
Score = 79.8 bits (40), Expect = 1e-15
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 236 gttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatgtgatag 294
||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 202 gttttataattagtgtatgtttaatactctaaattagtgtataaacatccgatgtgacag 261
Query: 295 ggac 298
||||
Sbjct: 262 ggac 265
>49009_osa-miR445b:pmrd
Length = 264
Score = 95.6 bits (48), Expect = 2e-20
Identities = 99/116 (85%)
Strand = Plus / Minus
Query: 14 gtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaatgaca 73
|||||||||||||| |||||| ||||||||| | ||||||||||||| | |||| | |
Sbjct: 264 gtccctgtcacatcggatgtttatacactaatttagagtattaaacatacattaattata 205
Query: 74 aaccccattccataaccctggattaattcgcgagatgaatctattgagtctaatta 129
|| || |||| |||||| |||| |||||||||||| |||||| |||||||||||||
Sbjct: 204 aaacctattctataaccttggactaattcgcgagacgaatcttttgagtctaatta 149
Score = 73.8 bits (37), Expect = 7e-14
Identities = 47/49 (95%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 251 tatgtttaata-tctaaattagtgtataaacatccgatgtgatagggac 298
||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 216 tatgtttaatactctaaattagtgtataaacatccgatgtgacagggac 264
Score = 48.1 bits (24), Expect = 4e-06
Identities = 49/56 (87%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 14 gtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaat 69
|||| ||||||||| ||||| |||| |||||| | ||||||||||||||||||||
Sbjct: 1 gtccgtgtcacatcgaatgtt-tgacgctaatttagagtattaaacatagactaat 55
>49016_osa-miR445i:pmrd
Length = 244
Score = 93.7 bits (47), Expect = 8e-20
Identities = 89/103 (86%)
Strand = Plus / Minus
Query: 13 agtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaatgac 72
||||||||||||||| |||||| ||||||||| ||||||||||||||| |||||| |
Sbjct: 238 agtccctgtcacatcggatgtttatacactaatttaaagtattaaacatacactaattat 179
Query: 73 aaaccccattccataaccctggattaattcgcgagatgaatct 115
||| || |||| |||||| |||| |||||||||||| ||||||
Sbjct: 178 aaaacctattctataaccttggactaattcgcgagacgaatct 136
Score = 73.8 bits (37), Expect = 7e-14
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 236 gttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatgtgatag 294
||||| ||| |||| ||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct: 174 gttttataattagtgtatgtttaatactttaaattagtgtataaacatccgatgtgacag 233
Query: 295 ggact 299
|||||
Sbjct: 234 ggact 238
Score = 65.9 bits (33), Expect = 2e-11
Identities = 113/135 (83%), Gaps = 6/135 (4%)
Strand = Plus / Minus
Query: 169 ttaattatggattaattaggcttaaaaattttgtctcacgaattagctctcatttatgca 228
|||||||||||||||||||||||||||| || |||||| ||||||| ||||||||| |
Sbjct: 134 ttaattatggattaattaggcttaaaaa-ttcatctcacagattagctttcatttatgaa 76
Query: 229 attattagttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgat 287
||||||||| | | |||| ||| ||||||| |||||||||| || |||||| ||||
Sbjct: 75 ---attagtttttttattagtctatatttaatactctaaattagcgt-caaacattcgat 20
Query: 288 gtgatagggactaaa 302
|||| | ||||||||
Sbjct: 19 gtgacacggactaaa 5
>49014_osa-miR445g:pmrd
Length = 275
Score = 81.8 bits (41), Expect = 3e-16
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 236 gttttgtaagtagtttatgtttaatat-ctaaattagtgtataaacatccgatgtgatag 294
||||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 207 gttttataattagtgtatgtttaatattctaaattagtgtataaacatccgatgtgacag 266
Query: 295 ggact 299
|||||
Sbjct: 267 ggact 271
Score = 73.8 bits (37), Expect = 7e-14
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 13 agtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaatgac 72
||||||||||||||| |||||| ||||||||| | | ||||||||||| |||||| |
Sbjct: 271 agtccctgtcacatcggatgtttatacactaatttagaatattaaacatacactaattat 212
Query: 73 aaaccccattccataaccctggattaattcgcgagatgaatctattgagtctaatta 129
||| | |||| |||||| |||| |||||||| ||| |||||| |||||| ||||||
Sbjct: 211 aaaacatattctataaccttggactaattcgcaagacgaatcttttgagtttaatta 155
Score = 71.9 bits (36), Expect = 3e-13
Identities = 112/134 (83%), Gaps = 5/134 (3%)
Strand = Plus / Minus
Query: 170 taattatggattaattaggcttaaaaattttgtctcacgaattagctctcatttatgcaa 229
||||||||||||||||||||||||||| || ||||| | ||||||| ||||||||| |
Sbjct: 131 taattatggattaattaggcttaaaaaattcgtctcgcagattagctttcatttatgaa- 73
Query: 230 ttattagttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatg 288
||||||||| | | |||| ||||||||||| || ||||||| || |||||| |||||
Sbjct: 72 --attagtttttttattagtctatgtttaatactccaaattagcgt-caaacattcgatg 16
Query: 289 tgatagggactaaa 302
||| | ||||||||
Sbjct: 15 tgacacggactaaa 2
Score = 48.1 bits (24), Expect = 4e-06
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 10 tttagtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaat 69
|||||||| ||||||||| ||||| |||| |||||| ||||||||||||||||||||
Sbjct: 2 tttagtccgtgtcacatcgaatgtt-tgacgctaatttggagtattaaacatagactaat 60
>51205_osa-miRf11990-akr:pmrd
Length = 135
Score = 79.8 bits (40), Expect = 1e-15
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 97 taattcgcgagatgaatctattgagtctaattaatcaatgattagcctatgtgatgctac 156
|||||||||||| ||||||||||| |||||||||| ||||||| | ||||| | |||||
Sbjct: 5 taattcgcgagacaaatctattgagcctaattaatccatgattaacatatgtaacgctac 64
Query: 157 actaaacatgtgttaattatggat 180
| | |||||||| |||||||||||
Sbjct: 65 agttaacatgtgctaattatggat 88
Score = 50.1 bits (25), Expect = 1e-06
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 162 acatgtgttaattatggattaattaggcttaaaaattttgtctcacgaattag 214
|||| ||||||| |||||||||||||||| || | |||||||| ||||||||
Sbjct: 56 acatatgttaatcatggattaattaggctcaatagatttgtctcgcgaattag 4
>49010_osa-miR445c:pmrd
Length = 260
Score = 69.9 bits (35), Expect = 1e-12
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 170 taattatggattaattaggcttaaaaattttgtctcacgaattagctctcatttatgcaa 229
||||||||||||||||||||||||||| || ||||| | ||||||| ||||||||| ||
Sbjct: 124 taattatggattaattaggcttaaaaaattcgtctcgcagattagctttcatttatgaaa 65
Query: 230 tta 232
|||
Sbjct: 64 tta 62
Score = 65.9 bits (33), Expect = 2e-11
Identities = 52/57 (91%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 236 gttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatgtga 291
||||| ||| |||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 200 gttttataattagtgtatatttaatactctaaattagtgtataaacatccgatgtga 256
>50895_osa-miRf11680-akr:pmrd
Length = 145
Score = 50.1 bits (25), Expect = 1e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 145 atgtgatgctacactaaacatgtgttaattatggattaattaggcttaa 193
||||| ||||| | ||||||| || |||| |||||||||||||||||||
Sbjct: 62 atgtggtgctaaagtaaacatttgctaatgatggattaattaggcttaa 110
>49004_osa-miR442:pmrd
Length = 233
Score = 50.1 bits (25), Expect = 1e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 145 atgtgatgctacactaaacatgtgttaattatggattaattaggcttaa 193
||||| ||||||| ||||||| || |||| | |||||||||||||||||
Sbjct: 107 atgtggtgctacagtaaacatttgctaatgacggattaattaggcttaa 155
>51249_osa-miRf12034-akr:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 2e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 102 cgcgagatgaatctattgagtctaattaatc 132
|||||||||||||| ||||| ||||||||||
Sbjct: 115 cgcgagatgaatctcttgagcctaattaatc 85
>51109_osa-miRf11894-akr:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 277 aaacatccgatgtgatagggact 299
|||||||||||||||||||||||
Sbjct: 83 aaacatccgatgtgatagggact 61
>51108_osa-miRf11893-akr:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 277 aaacatccgatgtgatagggact 299
|||||||||||||||||||||||
Sbjct: 15 aaacatccgatgtgatagggact 37
>49497_osa-miRf10282-akr:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 6e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 268 ttagtgtataaacatccgatgtgataggga 297
||||||| |||||||||||||||||||||
Sbjct: 1 ttagtgtccaaacatccgatgtgataggga 30
>51304_osa-miRf12089-akr:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 3e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 101 tcgcgagatgaatctattgagtctaatta 129
|||||||| |||||| |||||||||||||
Sbjct: 115 tcgcgagacgaatcttttgagtctaatta 87
>50155_osa-miRf10940-akr:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 3e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 111 aatctattgagtctaattaatcaatgattagcc 143
||||| ||||||||||||| || ||||||||||
Sbjct: 10 aatcttttgagtctaattagtccatgattagcc 42
