miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>49011_osa-miR445d:pmrd
          Length = 312

 Score =  618 bits (312), Expect = e-178
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggccaaaatttagtccctgtcacatcagatgttatgacactaattaaaagtattaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggccaaaatttagtccctgtcacatcagatgttatgacactaattaaaagtattaaaca 60

                                                                       
Query: 61  tagactaatgacaaaccccattccataaccctggattaattcgcgagatgaatctattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tagactaatgacaaaccccattccataaccctggattaattcgcgagatgaatctattga 120

                                                                       
Query: 121 gtctaattaatcaatgattagcctatgtgatgctacactaaacatgtgttaattatggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtctaattaatcaatgattagcctatgtgatgctacactaaacatgtgttaattatggat 180

                                                                       
Query: 181 taattaggcttaaaaattttgtctcacgaattagctctcatttatgcaattattagtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taattaggcttaaaaattttgtctcacgaattagctctcatttatgcaattattagtttt 240

                                                                       
Query: 241 gtaagtagtttatgtttaatatctaaattagtgtataaacatccgatgtgatagggacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtaagtagtttatgtttaatatctaaattagtgtataaacatccgatgtgatagggacta 300

                       
Query: 301 aagttggatcca 312
           ||||||||||||
Sbjct: 301 aagttggatcca 312




>49008_osa-miR445a:pmrd
          Length = 268

 Score =  153 bits (77), Expect = 1e-37
 Identities = 212/255 (83%), Gaps = 4/255 (1%)
 Strand = Plus / Minus

                                                                       
Query: 21  tcacatcagatgttatgacactaattaaaagtattaaacatagactaatgacaaacccca 80
           ||||||| ||||||   ||||||||| | ||||||||||||| |||||| | ||| || |
Sbjct: 268 tcacatcggatgtttatacactaatttagagtattaaacatacactaattataaaaccta 209

                                                                       
Query: 81  ttccataaccctggattaattcgcgagatgaatctattgagtctaattaatcaatgatta 140
           ||| |||||| |||| |||||||||||| |||||| |||||||||||||  | |||||| 
Sbjct: 208 ttctataaccttggactaattcgcgagacgaatcttttgagtctaattacaccatgattt 149

                                                                       
Query: 141 gcctatgtgatgctacactaaacatgtgttaattatggattaattaggcttaaaaatttt 200
           | | ||||||||||||| ||||| | |  ||||||||||||||||||||||||||| || 
Sbjct: 148 gacaatgtgatgctacagtaaacttttcataattatggattaattaggcttaaaaaattc 89

                                                                       
Query: 201 gtctcacgaattagctctcatttatgcaattattagttttgtaagtagtttatgtttaat 260
           ||||| |  ||||||| ||||||||| |   ||||||||| | | |||| ||||||||||
Sbjct: 88  gtctcgcagattagctttcatttatgaa---attagtttttttattagtctatgtttaat 32

                          
Query: 261 a-tctaaattagtgt 274
           | || ||||||||||
Sbjct: 31  actccaaattagtgt 17



 Score = 73.8 bits (37), Expect = 7e-14
 Identities = 53/57 (92%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                    
Query: 236 gttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatgtga 291
           ||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 212 gttttataattagtgtatgtttaatactctaaattagtgtataaacatccgatgtga 268



 Score = 44.1 bits (22), Expect = 6e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 36 tgacactaattaaaagtattaaacatagactaat 69
          |||||||||||   ||||||||||||||||||||
Sbjct: 15 tgacactaatttggagtattaaacatagactaat 48




>49015_osa-miR445h:pmrd
          Length = 277

 Score =  105 bits (53), Expect = 2e-23
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13  agtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaatgac 72
           ||||||||||||||| ||||||   ||||||||| | ||||||||||||| |||||| | 
Sbjct: 272 agtccctgtcacatcggatgtttatacactaatttagagtattaaacatacactaattat 213

                                                                    
Query: 73  aaaccccattccataaccctggattaattcgcgagatgaatctattgagtctaatta 129
           ||| || |||| |||||| |||| |||||||||||| |||||| |||||||||||||
Sbjct: 212 aaaacctattctataaccttggactaattcgcgagacgaatcttttgagtctaatta 156



 Score = 81.8 bits (41), Expect = 3e-16
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                       
Query: 236 gttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatgtgatag 294
           ||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 208 gttttataattagtgtatgtttaatactctaaattagtgtataaacatccgatgtgacag 267

                
Query: 295 ggact 299
           |||||
Sbjct: 268 ggact 272



 Score = 48.1 bits (24), Expect = 4e-06
 Identities = 52/60 (86%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 tttagtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaat 69
          |||||||| ||||||||   ||||| |||||||||||   ||||||||||||||||||||
Sbjct: 3  tttagtccgtgtcacattgaatgtt-tgacactaatttggagtattaaacatagactaat 61




>49013_osa-miR445f:pmrd
          Length = 305

 Score =  105 bits (53), Expect = 2e-23
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13  agtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaatgac 72
           ||||||||||||||| ||||||   ||||||||| | ||||||||||||| |||||| | 
Sbjct: 287 agtccctgtcacatcggatgtttatacactaatttagagtattaaacatacactaattat 228

                                                                    
Query: 73  aaaccccattccataaccctggattaattcgcgagatgaatctattgagtctaatta 129
           ||| || |||| |||||| |||| |||||||||||| |||||| |||||||||||||
Sbjct: 227 aaaacctattctataaccttggactaattcgcgagacgaatcttttgagtctaatta 171



 Score = 81.8 bits (41), Expect = 3e-16
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                       
Query: 236 gttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatgtgatag 294
           ||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 223 gttttataattagtgtatgtttaatactctaaattagtgtataaacatccgatgtgacag 282

                
Query: 295 ggact 299
           |||||
Sbjct: 283 ggact 287



 Score = 48.1 bits (24), Expect = 4e-06
 Identities = 52/60 (86%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 tttagtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaat 69
          |||||||| |||||||||  ||||| |||| ||||||   ||||||||||||||||||||
Sbjct: 18 tttagtccgtgtcacatcgaatgtt-tgacgctaatttggagtattaaacatagactaat 76




>49012_osa-miR445e:pmrd
          Length = 265

 Score =  103 bits (52), Expect = 8e-23
 Identities = 100/116 (86%)
 Strand = Plus / Minus

                                                                       
Query: 14  gtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaatgaca 73
           |||||||||||||| ||||||   ||||||||| | ||||||||||||| |||||| | |
Sbjct: 265 gtccctgtcacatcggatgtttatacactaatttagagtattaaacatacactaattata 206

                                                                   
Query: 74  aaccccattccataaccctggattaattcgcgagatgaatctattgagtctaatta 129
           || || |||| |||||| |||| |||||||||||| |||||| |||||||||||||
Sbjct: 205 aaacctattctataaccttggactaattcgcgagacgaatcttttgagtctaatta 150



 Score = 79.8 bits (40), Expect = 1e-15
 Identities = 59/64 (92%), Gaps = 1/64 (1%)
 Strand = Plus / Plus

                                                                       
Query: 236 gttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatgtgatag 294
           ||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 202 gttttataattagtgtatgtttaatactctaaattagtgtataaacatccgatgtgacag 261

               
Query: 295 ggac 298
           ||||
Sbjct: 262 ggac 265




>49009_osa-miR445b:pmrd
          Length = 264

 Score = 95.6 bits (48), Expect = 2e-20
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                       
Query: 14  gtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaatgaca 73
           |||||||||||||| ||||||   ||||||||| | ||||||||||||| | |||| | |
Sbjct: 264 gtccctgtcacatcggatgtttatacactaatttagagtattaaacatacattaattata 205

                                                                   
Query: 74  aaccccattccataaccctggattaattcgcgagatgaatctattgagtctaatta 129
           || || |||| |||||| |||| |||||||||||| |||||| |||||||||||||
Sbjct: 204 aaacctattctataaccttggactaattcgcgagacgaatcttttgagtctaatta 149



 Score = 73.8 bits (37), Expect = 7e-14
 Identities = 47/49 (95%), Gaps = 1/49 (2%)
 Strand = Plus / Plus

                                                            
Query: 251 tatgtttaata-tctaaattagtgtataaacatccgatgtgatagggac 298
           ||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 216 tatgtttaatactctaaattagtgtataaacatccgatgtgacagggac 264



 Score = 48.1 bits (24), Expect = 4e-06
 Identities = 49/56 (87%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                  
Query: 14 gtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaat 69
          |||| |||||||||  ||||| |||| |||||| | ||||||||||||||||||||
Sbjct: 1  gtccgtgtcacatcgaatgtt-tgacgctaatttagagtattaaacatagactaat 55




>49016_osa-miR445i:pmrd
          Length = 244

 Score = 93.7 bits (47), Expect = 8e-20
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13  agtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaatgac 72
           ||||||||||||||| ||||||   ||||||||| ||||||||||||||| |||||| | 
Sbjct: 238 agtccctgtcacatcggatgtttatacactaatttaaagtattaaacatacactaattat 179

                                                      
Query: 73  aaaccccattccataaccctggattaattcgcgagatgaatct 115
           ||| || |||| |||||| |||| |||||||||||| ||||||
Sbjct: 178 aaaacctattctataaccttggactaattcgcgagacgaatct 136



 Score = 73.8 bits (37), Expect = 7e-14
 Identities = 59/65 (90%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                       
Query: 236 gttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatgtgatag 294
           ||||| ||| |||| ||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct: 174 gttttataattagtgtatgtttaatactttaaattagtgtataaacatccgatgtgacag 233

                
Query: 295 ggact 299
           |||||
Sbjct: 234 ggact 238



 Score = 65.9 bits (33), Expect = 2e-11
 Identities = 113/135 (83%), Gaps = 6/135 (4%)
 Strand = Plus / Minus

                                                                       
Query: 169 ttaattatggattaattaggcttaaaaattttgtctcacgaattagctctcatttatgca 228
           |||||||||||||||||||||||||||| ||  ||||||  ||||||| ||||||||| |
Sbjct: 134 ttaattatggattaattaggcttaaaaa-ttcatctcacagattagctttcatttatgaa 76

                                                                       
Query: 229 attattagttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgat 287
              ||||||||| | | |||| ||| ||||||| |||||||||| ||  |||||| ||||
Sbjct: 75  ---attagtttttttattagtctatatttaatactctaaattagcgt-caaacattcgat 20

                          
Query: 288 gtgatagggactaaa 302
           |||| | ||||||||
Sbjct: 19  gtgacacggactaaa 5




>49014_osa-miR445g:pmrd
          Length = 275

 Score = 81.8 bits (41), Expect = 3e-16
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                       
Query: 236 gttttgtaagtagtttatgtttaatat-ctaaattagtgtataaacatccgatgtgatag 294
           ||||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 207 gttttataattagtgtatgtttaatattctaaattagtgtataaacatccgatgtgacag 266

                
Query: 295 ggact 299
           |||||
Sbjct: 267 ggact 271



 Score = 73.8 bits (37), Expect = 7e-14
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                       
Query: 13  agtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaatgac 72
           ||||||||||||||| ||||||   ||||||||| | | ||||||||||| |||||| | 
Sbjct: 271 agtccctgtcacatcggatgtttatacactaatttagaatattaaacatacactaattat 212

                                                                    
Query: 73  aaaccccattccataaccctggattaattcgcgagatgaatctattgagtctaatta 129
           ||| |  |||| |||||| |||| |||||||| ||| |||||| |||||| ||||||
Sbjct: 211 aaaacatattctataaccttggactaattcgcaagacgaatcttttgagtttaatta 155



 Score = 71.9 bits (36), Expect = 3e-13
 Identities = 112/134 (83%), Gaps = 5/134 (3%)
 Strand = Plus / Minus

                                                                       
Query: 170 taattatggattaattaggcttaaaaattttgtctcacgaattagctctcatttatgcaa 229
           ||||||||||||||||||||||||||| || ||||| |  ||||||| ||||||||| | 
Sbjct: 131 taattatggattaattaggcttaaaaaattcgtctcgcagattagctttcatttatgaa- 73

                                                                       
Query: 230 ttattagttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatg 288
             ||||||||| | | |||| ||||||||||| || ||||||| ||  |||||| |||||
Sbjct: 72  --attagtttttttattagtctatgtttaatactccaaattagcgt-caaacattcgatg 16

                         
Query: 289 tgatagggactaaa 302
           ||| | ||||||||
Sbjct: 15  tgacacggactaaa 2



 Score = 48.1 bits (24), Expect = 4e-06
 Identities = 52/60 (86%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 tttagtccctgtcacatcagatgttatgacactaattaaaagtattaaacatagactaat 69
          |||||||| |||||||||  ||||| |||| ||||||   ||||||||||||||||||||
Sbjct: 2  tttagtccgtgtcacatcgaatgtt-tgacgctaatttggagtattaaacatagactaat 60




>51205_osa-miRf11990-akr:pmrd
          Length = 135

 Score = 79.8 bits (40), Expect = 1e-15
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                       
Query: 97  taattcgcgagatgaatctattgagtctaattaatcaatgattagcctatgtgatgctac 156
           ||||||||||||  ||||||||||| |||||||||| ||||||| | ||||| | |||||
Sbjct: 5   taattcgcgagacaaatctattgagcctaattaatccatgattaacatatgtaacgctac 64

                                   
Query: 157 actaaacatgtgttaattatggat 180
           | | |||||||| |||||||||||
Sbjct: 65  agttaacatgtgctaattatggat 88



 Score = 50.1 bits (25), Expect = 1e-06
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 162 acatgtgttaattatggattaattaggcttaaaaattttgtctcacgaattag 214
           |||| ||||||| |||||||||||||||| || |  |||||||| ||||||||
Sbjct: 56  acatatgttaatcatggattaattaggctcaatagatttgtctcgcgaattag 4




>49010_osa-miR445c:pmrd
          Length = 260

 Score = 69.9 bits (35), Expect = 1e-12
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                       
Query: 170 taattatggattaattaggcttaaaaattttgtctcacgaattagctctcatttatgcaa 229
           ||||||||||||||||||||||||||| || ||||| |  ||||||| ||||||||| ||
Sbjct: 124 taattatggattaattaggcttaaaaaattcgtctcgcagattagctttcatttatgaaa 65

              
Query: 230 tta 232
           |||
Sbjct: 64  tta 62



 Score = 65.9 bits (33), Expect = 2e-11
 Identities = 52/57 (91%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                    
Query: 236 gttttgtaagtagtttatgtttaata-tctaaattagtgtataaacatccgatgtga 291
           ||||| ||| |||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 200 gttttataattagtgtatatttaatactctaaattagtgtataaacatccgatgtga 256




>50895_osa-miRf11680-akr:pmrd
          Length = 145

 Score = 50.1 bits (25), Expect = 1e-06
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 145 atgtgatgctacactaaacatgtgttaattatggattaattaggcttaa 193
           ||||| ||||| | ||||||| || |||| |||||||||||||||||||
Sbjct: 62  atgtggtgctaaagtaaacatttgctaatgatggattaattaggcttaa 110




>49004_osa-miR442:pmrd
          Length = 233

 Score = 50.1 bits (25), Expect = 1e-06
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 145 atgtgatgctacactaaacatgtgttaattatggattaattaggcttaa 193
           ||||| ||||||| ||||||| || |||| | |||||||||||||||||
Sbjct: 107 atgtggtgctacagtaaacatttgctaatgacggattaattaggcttaa 155




>51249_osa-miRf12034-akr:pmrd
          Length = 121

 Score = 46.1 bits (23), Expect = 2e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 102 cgcgagatgaatctattgagtctaattaatc 132
           |||||||||||||| ||||| ||||||||||
Sbjct: 115 cgcgagatgaatctcttgagcctaattaatc 85




>51109_osa-miRf11894-akr:pmrd
          Length = 96

 Score = 46.1 bits (23), Expect = 2e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 277 aaacatccgatgtgatagggact 299
           |||||||||||||||||||||||
Sbjct: 83  aaacatccgatgtgatagggact 61




>51108_osa-miRf11893-akr:pmrd
          Length = 98

 Score = 46.1 bits (23), Expect = 2e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 277 aaacatccgatgtgatagggact 299
           |||||||||||||||||||||||
Sbjct: 15  aaacatccgatgtgatagggact 37




>49497_osa-miRf10282-akr:pmrd
          Length = 127

 Score = 44.1 bits (22), Expect = 6e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 268 ttagtgtataaacatccgatgtgataggga 297
           |||||||  |||||||||||||||||||||
Sbjct: 1   ttagtgtccaaacatccgatgtgataggga 30




>51304_osa-miRf12089-akr:pmrd
          Length = 120

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 101 tcgcgagatgaatctattgagtctaatta 129
           |||||||| |||||| |||||||||||||
Sbjct: 115 tcgcgagacgaatcttttgagtctaatta 87




>50155_osa-miRf10940-akr:pmrd
          Length = 96

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 111 aatctattgagtctaattaatcaatgattagcc 143
           ||||| ||||||||||||| || ||||||||||
Sbjct: 10  aatcttttgagtctaattagtccatgattagcc 42