miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49055_osa-miR812h:pmrd
Length = 187
Score = 371 bits (187), Expect = e-103
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 1 ttgtactccctccgtcccattttaagtgcaatcatgagtttcgcccaactttaatcatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtactccctccgtcccattttaagtgcaatcatgagtttcgcccaactttaatcatct 60
Query: 61 gttttatttgaactttttataaatagtatttttattgttatgagattataaaatttaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttttatttgaactttttataaatagtatttttattgttatgagattataaaatttaaat 120
Query: 121 aagacggatgattaaagttggacacgaaaactcatggctacacttacaatgaaatggagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagacggatgattaaagttggacacgaaaactcatggctacacttacaatgaaatggagg 180
Query: 181 ggtacta 187
|||||||
Sbjct: 181 ggtacta 187
>49054_osa-miR812g:pmrd
Length = 242
Score = 97.6 bits (49), Expect = 3e-21
Identities = 100/115 (86%), Gaps = 4/115 (3%)
Strand = Plus / Minus
Query: 4 tactccctccgtcccattttaagtgcaatcatgagtttc---gcccaactttaatcatct 60
|||||||| ||||||||||||||| ||| ||||||||| | |||||||||||||||
Sbjct: 237 tactcccttcgtcccattttaagtacaactatgagtttccatgtccaactttaatcatcc 178
Query: 61 gttttatttgaacttttt-ataaatagtatttttattgttatgagattataaaat 114
|| |||||| || ||||| |||| ||||||||||||||||||||||| |||||||
Sbjct: 177 gtcttatttaaatttttttataattagtatttttattgttatgagataataaaat 123
Score = 75.8 bits (38), Expect = 1e-14
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 110 aaaatttaaataagacggatgattaaagttggacacgaaaactcat 155
||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 162 aaaatttaaataagacggatgattaaagttggacatggaaactcat 207
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 114 tttaaataagacggatgattaaagttg 140
||||||||||||||| |||||||||||
Sbjct: 80 tttaaataagacggacgattaaagttg 54
>49056_osa-miR812i:pmrd
Length = 242
Score = 79.8 bits (40), Expect = 7e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 116 taaataagacggatgattaaagttggacacgaaaactcatggct 159
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 168 taaataagacggatgattaaagttggacacgaaaactcagggct 211
>49057_osa-miR812j:pmrd
Length = 297
Score = 77.8 bits (39), Expect = 3e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 117 aaataagacggatgattaaagttggacacgaaaactcatggct 159
|||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 196 aaataagacggatgattaaagttggacacggaaactcatggct 238
Score = 71.9 bits (36), Expect = 2e-13
Identities = 63/71 (88%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 45 ccaactttaatcatctgttttatttgaactttttata--aatagtatttttattgttatg 102
||||||||||||||| || ||||||||| ||||| || | ||||||||||||||||||
Sbjct: 220 ccaactttaatcatccgtcttatttgaaatttttgtatgattagtatttttattgttatt 161
Query: 103 agattataaaa 113
|||||||||||
Sbjct: 160 agattataaaa 150
Score = 65.9 bits (33), Expect = 1e-11
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 110 aaaatttaaataagacggatgattaaagttggacacgaaaactcatggctacactta 166
|||| |||||||||||| | |||||||||||||| |||||||||||||||| ||||
Sbjct: 101 aaaaattaaataagacgaacaattaaagttggacaagaaaactcatggctacgctta 45
>49053_osa-miR812f:pmrd
Length = 179
Score = 63.9 bits (32), Expect = 4e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 110 aaaatttaaataagacggatgattaaagttggacacgaaaactcatgg 157
|||| |||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct: 132 aaaaattaaataaaacggatgattaaagttggacacggaaattcatgg 179
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 74 tttttataaatagtatttttattgttatgagattataaaa 113
||||||| | || ||||||||||||||| |||||||||||
Sbjct: 45 tttttatgattaatatttttattgttattagattataaaa 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 45 ccaactttaatcatctgttttattt 69
||||||||||||||| |||||||||
Sbjct: 163 ccaactttaatcatccgttttattt 139
>51125_osa-miRf11910-akr:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 74 tttttataaatagtatttttattgttatgagattataaaa 113
||||||||| |||||||||||||||| | |||| ||||||
Sbjct: 43 tttttataattagtatttttattgttgttagatgataaaa 82
>50597_osa-miRf11382-akr:pmrd
Length = 178
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 74 tttttataaatagtatttttattgttatgagattataaaa 113
||||||||| | |||||||||||||| | |||||||||||
Sbjct: 133 tttttataatttgtatttttattgttgttagattataaaa 94
>49875_osa-miRf10660-akr:pmrd
Length = 191
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 74 tttttataaatagtatttttattgttatgagattataaaa 113
||||||||| |||||||||||||||| | |||| ||||||
Sbjct: 57 tttttataattagtatttttattgttgttagatgataaaa 96
>49052_osa-miR812e:pmrd
Length = 170
Score = 46.1 bits (23), Expect = 9e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 87 tatttttattgttatgagattataaaatttaaata 121
||||||||||||||| |||| ||||||| ||||||
Sbjct: 53 tatttttattgttattagatgataaaatataaata 87
>49049_osa-miR812b:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 84 tagtatttttattgttatgagattataaaa 113
|||||||||||||||||| |||| ||||||
Sbjct: 118 tagtatttttattgttattagatgataaaa 89
>50431_osa-miRf11216-akr:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttgtactccctccgtcccatt 21
|||||||||||||||||||||
Sbjct: 60 ttgtactccctccgtcccatt 80
>50624_osa-miRf11409-akr:pmrd
Length = 167
Score = 40.1 bits (20), Expect = 6e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 74 tttttataaatagtatttttattgttatgagattataaaa 113
||||||||| ||||||||||||| || | |||| ||||||
Sbjct: 46 tttttataattagtatttttattattgttagataataaaa 85
>49621_osa-miRf10406-akr:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ttgtactccctccgtcccat 20
||||||||||||||||||||
Sbjct: 109 ttgtactccctccgtcccat 90
>48792_obr-miR812:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 117 aaataagacggatgattaaa-gttggacacgaaaac 151
|||||||||||||||| ||| ||||||||| |||||
Sbjct: 36 aaataagacggatgatcaaacgttggacacaaaaac 1
