miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49056_osa-miR812i:pmrd
Length = 242
Score = 391 bits (197), Expect = e-109
Identities = 227/242 (93%)
Strand = Plus / Plus
Query: 1 tagaactccctccatccaaaaataagcgtagccataagttttcgtcttcaacttagatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagaactccctccatccaaaaataagcgtagccataagttttcgtcttcaacttagatca 60
Query: 61 tctgtcttatttgaaacttttttatgattagtannnnnnnattagattgtaaaacatgaa 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 tctgtcttatttgaaacttttttatgattagtatttttttattagattgtaaaacatgaa 120
Query: 121 tattactttatgcatgacttatattattttagattttctnnnnnnnntaaataagacgga 180
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 121 tattactttatgcatgacttatattattttagattttctaaaaaaaataaataagacgga 180
Query: 181 tgattaaagttggacacgaaaactcagggctgcgcttattttgggaatgagggagtacgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgattaaagttggacacgaaaactcagggctgcgcttattttgggaatgagggagtacgg 240
Query: 241 ag 242
||
Sbjct: 241 ag 242
>49057_osa-miR812j:pmrd
Length = 297
Score = 85.7 bits (43), Expect = 1e-17
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 169 aaataagacggatgattaaagttggacacgaaaactcagggctgcgcttattttg 223
|||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct: 196 aaataagacggatgattaaagttggacacggaaactcatggctgcgtttattttg 250
Score = 69.9 bits (35), Expect = 9e-13
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 168 taaataagacggatgattaaagttggacacgaaaactcagggctgcgcttattttggga 226
||||||||||| | |||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct: 95 taaataagacgaacaattaaagttggacaagaaaactcatggctacgcttattttggga 37
Score = 61.9 bits (31), Expect = 2e-10
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 19 aaaataagcgtagccataagttttcgtcttcaacttagatcatctgtcttatttgaaact 78
||||||| || |||||| ||||| ||| | |||||| |||||| ||||||||||||| |
Sbjct: 249 aaaataaacgcagccatgagtttccgtgtccaactttaatcatccgtcttatttgaaatt 190
Query: 79 tttttatgattagta 93
||| |||||||||||
Sbjct: 189 tttgtatgattagta 175
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 19 aaaataagcgtagccataagttttc 43
||||||||||||||||| |||||||
Sbjct: 41 aaaataagcgtagccatgagttttc 65
>49055_osa-miR812h:pmrd
Length = 187
Score = 79.8 bits (40), Expect = 9e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 168 taaataagacggatgattaaagttggacacgaaaactcagggct 211
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 116 taaataagacggatgattaaagttggacacgaaaactcatggct 159
>49054_osa-miR812g:pmrd
Length = 242
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 168 taaataagacggatgattaaagttggacacgaaaactca 206
||||||||||||||||||||||||||||| | |||||||
Sbjct: 168 taaataagacggatgattaaagttggacatggaaactca 206
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 168 taaataagacggatgattaaagttg 192
||||||||||||| |||||||||||
Sbjct: 78 taaataagacggacgattaaagttg 54
>49053_osa-miR812f:pmrd
Length = 179
Score = 54.0 bits (27), Expect = 5e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 168 taaataagacggatgattaaagttggacacg 198
||||||| |||||||||||||||||||||||
Sbjct: 138 taaataaaacggatgattaaagttggacacg 168
>49049_osa-miR812b:pmrd
Length = 170
Score = 54.0 bits (27), Expect = 5e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 101 attagattgtaaaacatgaatattactttatgcatgact 139
||||||| |||||||||||||||||||||||| |||||
Sbjct: 102 attagatgataaaacatgaatattactttatgcgtgact 64
Score = 44.1 bits (22), Expect = 5e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 64 gtcttatttgaaacttttttatgattagta 93
||||||||||||| ||||| ||||||||||
Sbjct: 143 gtcttatttgaaaatttttaatgattagta 114
>50829_osa-miRf11614-akr:pmrd
Length = 179
Score = 50.1 bits (25), Expect = 8e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 110 taaaacatgaatattactttatgcatgacttat 142
|||||||||| || |||||||||||||||||||
Sbjct: 80 taaaacatgattaatactttatgcatgacttat 112
>49050_osa-miR812c:pmrd
Length = 164
Score = 50.1 bits (25), Expect = 8e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 110 taaaacatgaatattactttatgcatgacttat 142
||||||||||||| || ||||||||||||||||
Sbjct: 86 taaaacatgaataatattttatgcatgacttat 54
>49051_osa-miR812d:pmrd
Length = 153
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 110 taaaacatgaatattactttatgcatgactt 140
||||||||||||| |||||||||| ||||||
Sbjct: 83 taaaacatgaataatactttatgcgtgactt 53
>49048_osa-miR812a:pmrd
Length = 234
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gtcttatttgaaacttttttatgatta 90
||||||||||||| |||||||||||||
Sbjct: 59 gtcttatttgaaaattttttatgatta 85
>50253_osa-miRf11038-akr:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 110 taaaacatgaatattactttatgcatgacttat 142
||||||||| || |||||||||||||||||||
Sbjct: 77 taaaacatggttaatactttatgcatgacttat 109
>50252_osa-miRf11037-akr:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 110 taaaacatgaatattactttatgcatgacttat 142
||||||||| || |||||||||||||||||||
Sbjct: 77 taaaacatggttaatactttatgcatgacttat 109
>50251_osa-miRf11036-akr:pmrd
Length = 179
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 110 taaaacatgaatattactttatgcatgacttat 142
||||||||| || |||||||||||||||||||
Sbjct: 81 taaaacatggttaatactttatgcatgacttat 113
>50834_osa-miRf11619-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 216 ttattttgggaatgagggagtacg 239
||||||||||| ||||||||||||
Sbjct: 114 ttattttgggactgagggagtacg 137
>50833_osa-miRf11618-akr:pmrd
Length = 143
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 216 ttattttgggaatgagggagtacg 239
||||||||||| ||||||||||||
Sbjct: 29 ttattttgggactgagggagtacg 6
>50468_osa-miRf11253-akr:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 8e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 110 taaaacatgaatattactttatgcatga 137
|||||||||| || ||||||||||||||
Sbjct: 79 taaaacatgattaatactttatgcatga 106
>49596_osa-miRf10381-akr:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64 gtcttatttgaaacttttttatga 87
||||||||||||| ||||||||||
Sbjct: 64 gtcttatttgaaaattttttatga 87
>48793_obt-miR812:pmrd
Length = 175
Score = 40.1 bits (20), Expect = 8e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 101 attagattgtaaaacatgaatattactttatg 132
||||||| ||||||||||||| |||||||||
Sbjct: 107 attagatgataaaacatgaatagtactttatg 76
>48792_obr-miR812:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 8e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 169 aaataagacggatgattaaa-gttggacacgaaaac 203
|||||||||||||||| ||| ||||||||| |||||
Sbjct: 36 aaataagacggatgatcaaacgttggacacaaaaac 1
