miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49060_osa-miR814b:pmrd
Length = 74
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 accggacgagacacttcatagtacaacgaatctggacatgaagattcgttgtactataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accggacgagacacttcatagtacaacgaatctggacatgaagattcgttgtactataaa 60
Query: 61 gtgtctcgtctggt 74
||||||||||||||
Sbjct: 61 gtgtctcgtctggt 74
Score = 67.9 bits (34), Expect = 9e-13
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 5 gacgagacacttcatagtacaacgaatctggacatgaagattcgttgtactataaagtgt 64
|||||||||||| |||||||||||||||| | | |||||||||||||||| ||||||
Sbjct: 70 gacgagacactttatagtacaacgaatcttcatgtccagattcgttgtactatgaagtgt 11
Query: 65 ctcgtc 70
||||||
Sbjct: 10 ctcgtc 5
>49059_osa-miR814a:pmrd
Length = 97
Score = 75.8 bits (38), Expect = 4e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 accggacgagacacttcatagtacaacgaatctggaca 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 8 accggacgagacacttcatagtacaacgaatctggaca 45
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 10 gacacttcatagtacaacgaatctggaca 38
|||||||||||||||||||||||||||||
Sbjct: 81 gacacttcatagtacaacgaatctggaca 53
>49061_osa-miR814c:pmrd
Length = 83
Score = 60.0 bits (30), Expect = 2e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 gacacttcatagtacaacgaatctggacatgaag 43
||||||||||||||||||||||||||||| ||||
Sbjct: 10 gacacttcatagtacaacgaatctggacaggaag 43
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 42 agattcgttgtactataaagtgtctcgtctggt 74
|||||||||||||||| ||||||| | ||||||
Sbjct: 33 agattcgttgtactatgaagtgtcacatctggt 1
>50995_osa-miRf11780-akr:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 10 gacacttcatagtacaacgaatctggaca 38
||||| || ||||||||||||||||||||
Sbjct: 44 gacacatcctagtacaacgaatctggaca 72
>49672_osa-miRf10457-akr:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 10 gacacttcatagtacaacgaatctggac 37
||||||||||||||||| |||||||||
Sbjct: 81 gacacttcatagtacaataaatctggac 54
>49240_osa-miRf10025-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 gacacttcatagtacaacgaatctggac 37
||||| || |||||||||||||||||||
Sbjct: 12 gacacatcctagtacaacgaatctggac 39
>49239_osa-miRf10024-akr:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 10 gacacttcatagtacaacgaatctggac 37
||||| || |||||||||||||||||||
Sbjct: 89 gacacatcctagtacaacgaatctggac 62
