miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AP002485.2/92019-92165 39947:Oryza sativa Japonica
           Group
          Length = 147

 Score =  147 bits (74), Expect = 2e-35
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accggacgagacacttcatagtacaacgaatctggacatgaagattcgttgtactataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38  accggacgagacacttcatagtacaacgaatctggacatgaagattcgttgtactataaa 97

                         
Query: 61  gtgtctcgtctggt 74
           ||||||||||||||
Sbjct: 98  gtgtctcgtctggt 111



 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 5   gacgagacacttcatagtacaacgaatctggacatgaagattcgttgtactataaagtgt 64
           |||||||||||| ||||||||||||||||  |  |  |||||||||||||||| ||||||
Sbjct: 107 gacgagacactttatagtacaacgaatcttcatgtccagattcgttgtactatgaagtgt 48

                 
Query: 65  ctcgtc 70
           ||||||
Sbjct: 47  ctcgtc 42




>RF00906;MIR1122;AP002908.2/68380-68536 39947:Oryza sativa
          Japonica Group
          Length = 157

 Score = 75.8 bits (38), Expect = 7e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 1  accggacgagacacttcatagtacaacgaatctggaca 38
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 38 accggacgagacacttcatagtacaacgaatctggaca 75



 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 10  gacacttcatagtacaacgaatctggaca 38
           |||||||||||||||||||||||||||||
Sbjct: 111 gacacttcatagtacaacgaatctggaca 83




>RF00906;MIR1122;AP004031.3/125858-125981 39947:Oryza sativa
          Japonica Group
          Length = 124

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                  
Query: 1  accggacgagacacttcatagtacaacgaatctggacatg 40
          ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 87 accggacgagacatttcatagtacaacgaatctggacatg 48



 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 42 agattcgttgtactataaagtgtctcgtc 70
          |||||||||||||||| || |||||||||
Sbjct: 55 agattcgttgtactatgaaatgtctcgtc 83




>RF00906;MIR1122;AAAA02020247.1/9682-9526 39946:Oryza sativa
          Indica Group
          Length = 157

 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                     
Query: 1  accggacgagacacttcatagtacaacgaatctggacatgaag 43
          ||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 38 accggacgaaacacttcatagtacaacgaatctggacaggaag 80



 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 10  gacacttcatagtacaacgaatctgga 36
           ||||||| |||||||||||||||||||
Sbjct: 111 gacactttatagtacaacgaatctgga 85



 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                       
Query: 42 agattcgttgtactataaagtgtctcgtc 70
          |||||||||||||||| |||||| |||||
Sbjct: 70 agattcgttgtactatgaagtgtttcgtc 42




>RF00906;MIR1122;AAAA02000094.1/16089-15933 39946:Oryza sativa
           Indica Group
          Length = 157

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 43  gattcgttgtactataaagtgtctcgtctggt 74
           ||||||||||||||||||||||||||||||||
Sbjct: 89  gattcgttgtactataaagtgtctcgtctggt 120



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 5   gacgagacacttcatagtacaacgaatc 32
           |||||||||||| |||||||||||||||
Sbjct: 116 gacgagacactttatagtacaacgaatc 89




>RF00906;MIR1122;AC134256.4/172189-172345 39947:Oryza sativa
           Japonica Group
          Length = 157

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 1   accggacgagacacttcatagtacaacgaatctggacatg 40
           ||||||| |||||||||||||||||||||||| |||||||
Sbjct: 120 accggacaagacacttcatagtacaacgaatccggacatg 81



 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  accggacgagacacttcatagtacaacgaat 31
          |||||| | ||||||||||||||||||||||
Sbjct: 38 accggatgtgacacttcatagtacaacgaat 68




>RF00906;MIR1122;ABRL01001053.1/5989-5833 65489:Oryza barthii
          Length = 157

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 5   gacgagacacttcatagtacaacgaatctggacatg 40
           |||||||||||||||||||||||||||| |||||||
Sbjct: 116 gacgagacacttcatagtacaacgaatccggacatg 81



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 43  gattcgttgtactataaagtgtctcgtctg 72
           ||||||||||||||| ||||||||||||||
Sbjct: 89  gattcgttgtactatgaagtgtctcgtctg 118




>RF00906;MIR1122;AAAA02014936.1/13983-13869 39946:Oryza sativa
          Indica Group
          Length = 115

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                 
Query: 1  accggacgagacacttcatagtacaacgaatctggacat 39
          |||| ||||||||||||||||||||||||||| ||||||
Sbjct: 99 accgaacgagacacttcatagtacaacgaatccggacat 61



 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 1  accggacgagacacttcatagtacaacgaatctgg 35
          |||||| |||||||||||| |||||||||||||||
Sbjct: 17 accggatgagacacttcatggtacaacgaatctgg 51




>RF00906;MIR1122;AL606635.3/21906-21750 39947:Oryza sativa Japonica
           Group
          Length = 157

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 1   accggacgagacacttcatagtacaacgaatctggacat 39
           |||| ||||||||||||||||||||||||||| ||||||
Sbjct: 120 accgaacgagacacttcatagtacaacgaatccggacat 82



 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 1  accggacgagacacttcatagtacaacgaatctgg 35
          |||||| |||||||||||| |||||||||||||||
Sbjct: 38 accggatgagacacttcatggtacaacgaatctgg 72




>RF00906;MIR1122;EU337975.1/586-742 39946:Oryza sativa Indica Group
          Length = 157

 Score = 60.0 bits (30), Expect = 4e-09
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 1   accggacgagacacttcatagtacaacgaatctggaca 38
           |||||| | |||||||||||||||||||||||||||||
Sbjct: 120 accggatgtgacacttcatagtacaacgaatctggaca 83



 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 1  accggacgagacacttcatagtacaacgaatc 32
          |||||||||||||||||||||||| |||||||
Sbjct: 38 accggacgagacacttcatagtaccacgaatc 69




>RF00906;MIR1122;AP008209.1/30325748-30325904 39947:Oryza sativa
           Japonica Group
          Length = 157

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 1   accggacgagacacttcatagtacaacgaatctggacatg 40
           |||||| | ||||||||||||||||| |||||||||||||
Sbjct: 120 accggatgtgacacttcatagtacaatgaatctggacatg 81




>RF00906;MIR1122;AACV01012603.1/10671-10517 39947:Oryza sativa
           Japonica Group
          Length = 155

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 10  gacacttcatagtacaacgaatctggacatga 41
           |||||| |||||||||||||||||||||||||
Sbjct: 111 gacactacatagtacaacgaatctggacatga 80



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 17 catagtacaacgaatctggacatg 40
          ||||||||||||||||||||||||
Sbjct: 55 catagtacaacgaatctggacatg 78




>RF00906;MIR1122;AP003711.3/78857-78701 39947:Oryza sativa Japonica
           Group
          Length = 157

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 1   accggacgagacacttcatagtacaacgaatc 32
           ||||||||| ||||||||||||||||||||||
Sbjct: 120 accggacgaaacacttcatagtacaacgaatc 89



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 10 gacacttcatagtacaacgaatctggacatgaag 43
          ||||||| ||||||||||||||||||||| ||||
Sbjct: 47 gacactttatagtacaacgaatctggacaggaag 80



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 42 agattcgttgtactataaagtgtc 65
          ||||||||||||||||||||||||
Sbjct: 70 agattcgttgtactataaagtgtc 47




>RF00906;MIR1122;AP008207.1/915692-915536 39947:Oryza sativa
           Japonica Group
          Length = 157

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 1   accggacgagacacttcatagtacaacgaatc 32
           ||||||||||||||||||||||||||| ||||
Sbjct: 120 accggacgagacacttcatagtacaacaaatc 89




>RF00906;MIR1122;AACV01006359.1/1475-1631 39947:Oryza sativa
           Japonica Group
          Length = 157

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 5   gacgagacacttcatagtacaacgaatctggacatg 40
           |||||||||||||||| ||||||||||| |||||||
Sbjct: 116 gacgagacacttcataatacaacgaatccggacatg 81



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 43  gattcgttgtactataaagtgtctcgtctg 72
           ||||||||||| ||| ||||||||||||||
Sbjct: 89  gattcgttgtattatgaagtgtctcgtctg 118




>RF00906;MIR1122;AAAA02005311.1/24621-24777 39946:Oryza sativa
           Indica Group
          Length = 157

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 10  gacacttcatagtacaacgaatctggacatg 40
           ||||||||||||||||| |||||||||||||
Sbjct: 111 gacacttcatagtacaatgaatctggacatg 81




>RF00906;MIR1122;AAAA02032515.1/3115-3271 39946:Oryza sativa Indica
           Group
          Length = 157

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 1   accggacgagacacttcatagtacaacgaat 31
           ||||||||||| |||||||||||||||||||
Sbjct: 120 accggacgagatacttcatagtacaacgaat 90




>RF00906;MIR1122;AACV01003486.1/94-250 39947:Oryza sativa Japonica
          Group
          Length = 157

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 10 gacacttcatagtacaacgaatctggacatg 40
          ||||||||||||||||| |||||||||||||
Sbjct: 47 gacacttcatagtacaatgaatctggacatg 77




>RF00906;MIR1122;AAAA02018390.1/16986-17138 39946:Oryza sativa
           Indica Group
          Length = 153

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 10  gacacttcatagtacaacgaatctggacatgaag 43
           ||||||| ||||||||||||||||||||| ||||
Sbjct: 111 gacactttatagtacaacgaatctggacaagaag 78



 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 4  ggacgagacacttcatagtacaacgaatctggacatg 40
          |||||||||| |||||||||||| ||||| |||||||
Sbjct: 41 ggacgagacatttcatagtacaatgaatccggacatg 77



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 42  agattcgttgtactataaagtgtc 65
           ||||||||||||||||||||||||
Sbjct: 88  agattcgttgtactataaagtgtc 111




>RF00906;MIR1122;AAAA02033572.1/45748-45869 39946:Oryza sativa
          Indica Group
          Length = 122

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                    
Query: 15 ttcatagtacaacgaatctggacatg 40
          ||||||||||||||||||||||||||
Sbjct: 71 ttcatagtacaacgaatctggacatg 46




>RF00906;MIR1122;AC025905.3/47917-48072 4530:Oryza sativa (rice)
          Length = 156

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 15  ttcatagtacaacgaatctggacatg 40
           ||||||||||||||||||||||||||
Sbjct: 105 ttcatagtacaacgaatctggacatg 80




>RF00906;MIR1122;AACV01013846.1/34700-34544 39947:Oryza sativa
          Japonica Group
          Length = 157

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 10 gacacttcatagtacaacgaatctggacatgaag 43
          ||||||| ||||||||||||||||||||| ||||
Sbjct: 47 gacactttatagtacaacgaatctggacaggaag 80



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 42 agattcgttgtactataaagtgtc 65
          ||||||||||||||||||||||||
Sbjct: 70 agattcgttgtactataaagtgtc 47




>RF00906;MIR1122;AP008216.1/17487566-17487411 39947:Oryza sativa
           Japonica Group
          Length = 156

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 3   cggacgagacacttcatagtacaacgaatctggacatg 40
           |||||| ||||||||||||||||| ||||| |||||||
Sbjct: 117 cggacgtgacacttcatagtacaatgaatccggacatg 80




>RF00906;MIR1122;AP008212.1/7989879-7989724 39947:Oryza sativa
           Japonica Group
          Length = 156

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 9   agacacttcatagtacaacgaatctggaca 38
           ||||| ||||||||||||||||||||||||
Sbjct: 111 agacatttcatagtacaacgaatctggaca 82



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ttcatagtacaacgaatctggacatg 40
          |||||||||||| |||||||||||||
Sbjct: 52 ttcatagtacaatgaatctggacatg 77




>RF00906;MIR1122;AACV01017146.1/25916-25760 39947:Oryza sativa
           Japonica Group
          Length = 157

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 18  atagtacaacgaatctggacatgaag 43
           ||||||||||||||||||||||||||
Sbjct: 103 atagtacaacgaatctggacatgaag 78




>RF00906;MIR1122;AAAA02017206.1/17057-17207 39946:Oryza sativa
          Indica Group
          Length = 151

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 4  ggacgagacacttcatagtacaacgaatc 32
          ||||| |||||||||||||||||||||||
Sbjct: 36 ggacgggacacttcatagtacaacgaatc 64




>RF00906;MIR1122;AACV01013196.1/2181-2029 39947:Oryza sativa
           Japonica Group
          Length = 153

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 4   ggacgagacacttcatagtacaacgaatctggacatg 40
           |||||||||| |||||||||||| ||||| |||||||
Sbjct: 113 ggacgagacatttcatagtacaatgaatccggacatg 77



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 10 gacacttcatagtacaacgaatctggacatgaag 43
          ||||||| |||||| |||||||||||||| ||||
Sbjct: 43 gacactttatagtataacgaatctggacaagaag 76




>RF00906;MIR1122;AACV01012172.1/17743-17893 39947:Oryza sativa
          Japonica Group
          Length = 151

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 4  ggacgagacacttcatagtacaacgaatc 32
          ||||| |||||||||||||||||||||||
Sbjct: 36 ggacgggacacttcatagtacaacgaatc 64




>RF00906;MIR1122;AAAA02020328.1/21348-21502 39946:Oryza sativa
          Indica Group
          Length = 155

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 8  gagacacttcatagtacaacgaatctggacatg 40
          |||||| |||||||||||| |||||||||||||
Sbjct: 45 gagacatttcatagtacaatgaatctggacatg 77



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                 
Query: 1   accggacgagacacttcatagtacaacgaatctggaca 38
           ||||||||||||| ||||||||| || |||||||||||
Sbjct: 118 accggacgagacatttcatagta-aatgaatctggaca 82




>RF00906;MIR1122;AAAA02034764.1/9751-9907 39946:Oryza sativa Indica
           Group
          Length = 157

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 11  acacttcatagtacaacgaatctggacatgaag 43
           |||||||||||||||| ||||||||||| ||||
Sbjct: 110 acacttcatagtacaatgaatctggacaggaag 78




>RF00906;MIR1122;AP003866.3/59767-59922 39947:Oryza sativa Japonica
           Group
          Length = 156

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 8   gagacacttcatagtacaacgaatctgga 36
           |||||||||| ||||||||||||||||||
Sbjct: 112 gagacacttcctagtacaacgaatctgga 84




>RF00906;MIR1122;AP002869.1/81681-81526 39947:Oryza sativa Japonica
           Group
          Length = 156

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 15  ttcatagtacaacgaatctggaca 38
           ||||||||||||||||||||||||
Sbjct: 105 ttcatagtacaacgaatctggaca 82



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ttcatagtacaacgaatctggacatg 40
          |||||||||||| |||||||||||||
Sbjct: 52 ttcatagtacaatgaatctggacatg 77




>RF00906;MIR1122;AAAA02018672.1/7033-6895 39946:Oryza sativa Indica
           Group
          Length = 139

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 17  catagtacaacgaatctggacatg 40
           ||||||||||||||||||||||||
Sbjct: 107 catagtacaacgaatctggacatg 84



 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 17 catagtacaacgaatctggacat 39
          |||||||||||||||||||||||
Sbjct: 33 catagtacaacgaatctggacat 55



 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 17 catagtacaacgaatctggacatga 41
          ||||||||||| |||||||||||||
Sbjct: 58 catagtacaacaaatctggacatga 82




>RF00906;MIR1122;AAAA02017692.1/3609-3744 39946:Oryza sativa
          Indica Group
          Length = 136

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                          
Query: 10 gacacttcatagtacaacgaatctggacatga 41
          |||||| ||||||||||||||| |||||||||
Sbjct: 92 gacactacatagtacaacgaatatggacatga 61




>RF00906;MIR1122;AACV01011889.1/2622-2752 39947:Oryza sativa
          Japonica Group
          Length = 131

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 16 tcatagtacaacgaatctggaca 38
          |||||||||||||||||||||||
Sbjct: 79 tcatagtacaacgaatctggaca 57




>RF00906;MIR1122;AP008209.1/26976879-26977035 39947:Oryza sativa
          Japonica Group
          Length = 157

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 13 acttcatagtacaacgaatctggacatgaag 43
          |||||||| ||||||||||||||||| ||||
Sbjct: 50 acttcatattacaacgaatctggacaggaag 80



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 1   accggacgagacacttcatagtacaa 26
           ||||||||||| ||||||||||||||
Sbjct: 120 accggacgagatacttcatagtacaa 95




>RF00906;MIR1122;AP005826.3/13057-12891 39947:Oryza sativa Japonica
           Group
          Length = 167

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 10  gacacttcatagtacaacgaatctggacatg 40
           |||| ||||||||||| ||||||||||||||
Sbjct: 122 gacatttcatagtacaccgaatctggacatg 92




>RF00906;MIR1122;AP004378.5/54695-54821 39947:Oryza sativa
          Japonica Group
          Length = 127

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 9  agacacttcatagtacaacgaatctggacat 39
          ||||| || ||||||||||||||||||||||
Sbjct: 46 agacattttatagtacaacgaatctggacat 76



 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 42 agattcgttgtactataaagtgtct 66
          ||||||||||||||||||| |||||
Sbjct: 70 agattcgttgtactataaaatgtct 46




>RF00906;MIR1122;AC087547.2/14662-14507 4530:Oryza sativa (rice)
          Length = 156

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 19 tagtacaacgaatctggacatga 41
          |||||||||||||||||||||||
Sbjct: 58 tagtacaacgaatctggacatga 80




>RF00906;MIR1122;AP008214.1/2934446-2934579 39947:Oryza sativa
          Japonica Group
          Length = 134

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                 
Query: 1  accggacgagacacttcatagtacaacgaatctggacat 39
          |||| |||||||| ||||||| |||| ||||||||||||
Sbjct: 97 accgaacgagacatttcataggacaatgaatctggacat 59




>RF00906;MIR1122;AAAA02001787.1/17032-16917 39946:Oryza sativa
          Indica Group
          Length = 116

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 1  accggacgagacacttcatagtacaacgaatctggaca 38
          |||| |||||||| ||||||| ||||||||||| ||||
Sbjct: 38 accgaacgagacatttcataggacaacgaatctagaca 75




>RF00906;MIR1122;AAAA02005541.1/45284-45440 39946:Oryza sativa
          Indica Group
          Length = 157

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 ttcatagtacaacgaatctgga 36
          ||||||||||||||||||||||
Sbjct: 52 ttcatagtacaacgaatctgga 73




>RF00906;MIR1122;AACV01013085.1/19238-19395 39947:Oryza sativa
          Japonica Group
          Length = 158

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 1  accggacgagacacttcatagtacaacgaa 30
          ||||||||| ||| ||||||||||||||||
Sbjct: 37 accggacgaaacatttcatagtacaacgaa 66




>RF00906;MIR1122;AACV01005493.1/30553-30709 39947:Oryza sativa
          Japonica Group
          Length = 157

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 10 gacacttcatagtacaacgaatctgg 35
          |||| |||||||||||||||||||||
Sbjct: 47 gacatttcatagtacaacgaatctgg 72




>RF00906;MIR1122;AAAA02030479.1/4787-4952 39946:Oryza sativa Indica
           Group
          Length = 166

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 15  ttcatagtacaacgaatctgga 36
           ||||||||||||||||||||||
Sbjct: 116 ttcatagtacaacgaatctgga 95




>RF00906;MIR1122;AACV01022113.1/70289-70455 39947:Oryza sativa
           Japonica Group
          Length = 167

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 15  ttcatagtacaacgaatctgga 36
           ||||||||||||||||||||||
Sbjct: 117 ttcatagtacaacgaatctgga 96




>RF00906;MIR1122;AACV01025355.1/1742-1876 39947:Oryza sativa
          Japonica Group
          Length = 135

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 19 tagtacaacgaatctggacatgaaga 44
          |||||||||||||||||||| |||||
Sbjct: 56 tagtacaacgaatctggacaggaaga 81




>RF00906;MIR1122;AAAA02014858.1/50124-50003 39946:Oryza sativa
          Indica Group
          Length = 122

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                
Query: 1  accggacgagacacttcatagtacaacgaatctggaca 38
          |||||| | |||| ||||||||||||||||| ||||||
Sbjct: 85 accggatgtgacatttcatagtacaacgaatatggaca 48




>RF00906;MIR1122;AP008218.1/11313857-11314012 39947:Oryza sativa
          Japonica Group
          Length = 156

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 ttcatagtacaacgaatctggacatg 40
          |||||||||||| |||||||||||||
Sbjct: 52 ttcatagtacaatgaatctggacatg 77




>RF00906;MIR1122;AC137593.2/94685-94531 39947:Oryza sativa Japonica
           Group
          Length = 155

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 1   accggacgagacacttcatagtacaacgaatctggaca 38
           |||||| ||||||| || || |||||||||||||||||
Sbjct: 118 accggatgagacacatcctaatacaacgaatctggaca 81




>RF00906;MIR1122;AP004680.3/59671-59809 39947:Oryza sativa
          Japonica Group
          Length = 139

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                
Query: 1  accggacgagacacttcatagtacaacgaatctggaca 38
          ||||||||||||| ||||||||| || |||||||||||
Sbjct: 38 accggacgagacatttcatagta-aatgaatctggaca 74




>RF00906;MIR1122;AC138001.2/59407-59266 39947:Oryza sativa
          Japonica Group
          Length = 142

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 19 tagtacaacgaatctggacatg 40
          ||||||||||||||||||||||
Sbjct: 61 tagtacaacgaatctggacatg 82




>RF00906;MIR1122;AAAA02008343.1/9662-9526 39946:Oryza sativa
          Indica Group
          Length = 137

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 19 tagtacaacgaatctggacat 39
          |||||||||||||||||||||
Sbjct: 57 tagtacaacgaatctggacat 77




>RF00906;MIR1122;AAAA02014808.1/30258-30413 39946:Oryza sativa
           Indica Group
          Length = 156

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 10  gacacttcatagtacaacgaatctggaca 38
           |||| ||||||||||||||||||| ||||
Sbjct: 110 gacatttcatagtacaacgaatctagaca 82




>RF00906;MIR1122;AAAA02022617.1/34247-34092 39946:Oryza sativa
           Indica Group
          Length = 156

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 18  atagtacaacgaatctggaca 38
           |||||||||||||||||||||
Sbjct: 102 atagtacaacgaatctggaca 82




>RF00906;MIR1122;AC145810.3/47756-47629 39947:Oryza sativa
          Japonica Group
          Length = 128

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 18 atagtacaacgaatctggaca 38
          |||||||||||||||||||||
Sbjct: 50 atagtacaacgaatctggaca 70




>RF00906;MIR1122;AC092779.5/114881-115036 39947:Oryza sativa
          Japonica Group
          Length = 156

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 10 gacacttcatagtacaacgaatctggaca 38
          ||||| || ||||||||||||||||||||
Sbjct: 47 gacacatcctagtacaacgaatctggaca 75



 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 10  gacacttcatagtacaacgaatctggaca 38
           ||||| || ||||||||||||||||||||
Sbjct: 110 gacacatcctagtacaacgaatctggaca 82




>RF00906;MIR1122;AAAA02007473.1/30171-30327 39946:Oryza sativa
           Indica Group
          Length = 157

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 9   agacacttcatagtacaacgaatctggacatga 41
           ||||| |||||||||||| |||||| |||||||
Sbjct: 112 agacatttcatagtacaatgaatctagacatga 80




>RF00906;MIR1122;AP008208.1/15568785-15568653 39947:Oryza sativa
          Japonica Group
          Length = 133

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                       
Query: 10 gacacttcatagtacaacgaatctggaca 38
          |||| ||| ||||||||||||||||||||
Sbjct: 87 gacatttcctagtacaacgaatctggaca 59




>RF00906;MIR1122;AAAA02032049.1/7937-7781 39946:Oryza sativa Indica
           Group
          Length = 157

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 19  tagtacaacgaatctggacat 39
           |||||||||||||||||||||
Sbjct: 102 tagtacaacgaatctggacat 82




>RF00906;MIR1122;AAAA02028930.1/6053-6188 39946:Oryza sativa
          Indica Group
          Length = 136

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                       
Query: 10 gacacttcatagtacaacgaatctggaca 38
          ||||| || ||||||||||||||||||||
Sbjct: 90 gacacatcctagtacaacgaatctggaca 62




>RF00906;MIR1122;AAAA02017627.1/6518-6673 39946:Oryza sativa
          Indica Group
          Length = 156

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 10 gacacttcatagtacaacgaatctggaca 38
          |||| ||||||||||| ||||||||||||
Sbjct: 47 gacatttcatagtacaccgaatctggaca 75




>RF00906;MIR1122;AP003684.3/140140-140272 39947:Oryza sativa
          Japonica Group
          Length = 133

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 10 gacacttcatagtacaacgaatctggaca 38
          |||| ||||||||||||||||||| ||||
Sbjct: 47 gacatttcatagtacaacgaatctagaca 75




>RF00906;MIR1122;AP008214.1/337131-337286 39947:Oryza sativa
          Japonica Group
          Length = 156

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                           
Query: 42 agattcgttgtactataaagtgtctcgtctggt 74
          ||||||||||||||||||| |||| | ||||||
Sbjct: 70 agattcgttgtactataaaatgtcccatctggt 38



 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 18 atagtacaacgaatctggaca 38
          |||||||||||||||||||||
Sbjct: 55 atagtacaacgaatctggaca 75




>RF00906;MIR1122;AAAA02004945.1/9210-9077 39946:Oryza sativa
          Indica Group
          Length = 134

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 18 atagtacaacgaatctggaca 38
          |||||||||||||||||||||
Sbjct: 55 atagtacaacgaatctggaca 75




>RF00906;MIR1122;AK101131.1/45-161 39947:Oryza sativa Japonica
          Group
          Length = 117

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                       
Query: 10 gacacttcatagtacaacgaatctggaca 38
          ||||| || ||||||||||||||||||||
Sbjct: 71 gacacatcctagtacaacgaatctggaca 43




>RF00906;MIR1122;AAAA02000357.1/59924-60057 39946:Oryza sativa
          Indica Group
          Length = 134

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                       
Query: 11 acacttcatagtacaacgaatctggacat 39
          ||||||| |||||||||||||| ||||||
Sbjct: 87 acacttcctagtacaacgaatccggacat 59




>RF00906;MIR1122;AP008217.1/23244951-23245072 39947:Oryza sativa
          Japonica Group
          Length = 122

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 10 gacacttcatagtacaacgaatctggaca 38
          ||||| || ||||||||||||||||||||
Sbjct: 47 gacacatcctagtacaacgaatctggaca 75