miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00884;MIR815;AC134346.3/9712-9789 39947:Oryza sativa Japonica
           Group
          Length = 78

 Score =  155 bits (78), Expect = 2e-37
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                       
Query: 27  attcccaatcttctctatttccttctcctcaaacacagcctgggagtgtttgagaagggg 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attcccaatcttctctatttccttctcctcaaacacagcctgggagtgtttgagaagggg 60

                             
Query: 87  attgaggagattgggaag 104
           ||||||||||||||||||
Sbjct: 61  attgaggagattgggaag 78




>RF00884;MIR815;AAAA02030926.1/109-192 39946:Oryza sativa Indica
           Group
          Length = 84

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           |||||||||||||||||||||||||||
Sbjct: 58  gagaaggggattgaggagattgggaag 84




>RF00884;MIR815;AAAA02011740.1/7000-7076 39946:Oryza sativa Indica
           Group
          Length = 77

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           |||||||||||||||||||||||||||
Sbjct: 51  gagaaggggattgaggagattgggaag 77




>RF00884;MIR815;AAAA02016069.1/1433-1357 39946:Oryza sativa Indica
           Group
          Length = 77

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           |||||||||||||||||||||||||||
Sbjct: 51  gagaaggggattgaggagattgggaag 77




>RF00884;MIR815;AC060755.9/7831-7755 4530:Oryza sativa (rice)
          Length = 77

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           |||||||||||||||||||||||||||
Sbjct: 51  gagaaggggattgaggagattgggaag 77




>RF00884;MIR815;AP008210.1/4631584-4631661 39947:Oryza sativa
           Japonica Group
          Length = 78

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           |||||||||||||||||||||||||||
Sbjct: 52  gagaaggggattgaggagattgggaag 78




>RF00884;MIR815;AACV01002220.1/8374-8275 39947:Oryza sativa Japonica
           Group
          Length = 100

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           |||||||||||||||||||||||||||
Sbjct: 74  gagaaggggattgaggagattgggaag 100




>RF00884;MIR815;AACV01011653.1/8108-8205 39947:Oryza sativa Japonica
           Group
          Length = 98

 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           |||||||||||||||||||||||||||
Sbjct: 72  gagaaggggattgaggagattgggaag 98




>RF00884;MIR815;AACV01022467.1/15539-15458 39947:Oryza sativa
           Japonica Group
          Length = 82

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 79  agaaggggattgaggagattgggaag 104
           ||||||||||||||||||||||||||
Sbjct: 57  agaaggggattgaggagattgggaag 82




>RF00884;MIR815;AC144455.5/110578-110658 39947:Oryza sativa Japonica
           Group
          Length = 81

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 78  gagaaggggattgaggagattggg 101
           ||||||||||||||||||||||||
Sbjct: 55  gagaaggggattgaggagattggg 78




>RF00884;MIR815;ABRL01001579.1/2500-2411 65489:Oryza barthii
          Length = 90

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           |||| ||||||||||||||||||||||
Sbjct: 64  gagagggggattgaggagattgggaag 90




>RF00884;MIR815;AAAA02008547.1/261-352 39946:Oryza sativa Indica
           Group
          Length = 92

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           |||| ||||||||||||||||||||||
Sbjct: 66  gagagggggattgaggagattgggaag 92




>RF00884;MIR815;AAAA02032459.1/15092-15173 39946:Oryza sativa Indica
           Group
          Length = 82

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           |||||||||||||||||||||| ||||
Sbjct: 56  gagaaggggattgaggagattgagaag 82




>RF00884;MIR815;AP005243.4/101841-101897 39947:Oryza sativa Japonica
           Group
          Length = 57

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 82  aggggattgaggagattgggaag 104
           |||||||||||||||||||||||
Sbjct: 35  aggggattgaggagattgggaag 57




>RF00884;MIR815;AAAA02007943.1/48641-48553 39946:Oryza sativa Indica
           Group
          Length = 89

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 82  aggggattgaggagattgggaag 104
           |||||||||||||||||||||||
Sbjct: 67  aggggattgaggagattgggaag 89




>RF00884;MIR815;AAAA02016932.1/1284-1202 39946:Oryza sativa Indica
           Group
          Length = 83

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           ||||||||||||||||||||| |||||
Sbjct: 57  gagaaggggattgaggagattaggaag 83




>RF00884;MIR815;AL606651.3/23126-23039 39947:Oryza sativa Japonica
           Group
          Length = 88

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           ||||||||||||||| |||||||||||
Sbjct: 62  gagaaggggattgagaagattgggaag 88




>RF00884;MIR815;AC118669.2/110482-110561 39947:Oryza sativa Japonica
           Group
          Length = 80

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           |||| ||||||||||||||||||||||
Sbjct: 54  gagagggggattgaggagattgggaag 80




>RF00884;MIR815;AAAA02000503.1/3753-3669 39946:Oryza sativa Indica
           Group
          Length = 85

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           ||||||||||||| |||||||||||||
Sbjct: 59  gagaaggggattggggagattgggaag 85




>RF00884;MIR815;AAAA02001160.1/13395-13311 39946:Oryza sativa Indica
           Group
          Length = 85

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 78  gagaaggggattgaggagattgggaag 104
           ||||||||||| |||||||||||||||
Sbjct: 59  gagaaggggatcgaggagattgggaag 85