miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00884;MIR815;AC134346.3/9712-9789 39947:Oryza sativa Japonica
Group
Length = 78
Score = 155 bits (78), Expect = 2e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 27 attcccaatcttctctatttccttctcctcaaacacagcctgggagtgtttgagaagggg 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attcccaatcttctctatttccttctcctcaaacacagcctgggagtgtttgagaagggg 60
Query: 87 attgaggagattgggaag 104
||||||||||||||||||
Sbjct: 61 attgaggagattgggaag 78
>RF00884;MIR815;AAAA02030926.1/109-192 39946:Oryza sativa Indica
Group
Length = 84
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
|||||||||||||||||||||||||||
Sbjct: 58 gagaaggggattgaggagattgggaag 84
>RF00884;MIR815;AAAA02011740.1/7000-7076 39946:Oryza sativa Indica
Group
Length = 77
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
|||||||||||||||||||||||||||
Sbjct: 51 gagaaggggattgaggagattgggaag 77
>RF00884;MIR815;AAAA02016069.1/1433-1357 39946:Oryza sativa Indica
Group
Length = 77
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
|||||||||||||||||||||||||||
Sbjct: 51 gagaaggggattgaggagattgggaag 77
>RF00884;MIR815;AC060755.9/7831-7755 4530:Oryza sativa (rice)
Length = 77
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
|||||||||||||||||||||||||||
Sbjct: 51 gagaaggggattgaggagattgggaag 77
>RF00884;MIR815;AP008210.1/4631584-4631661 39947:Oryza sativa
Japonica Group
Length = 78
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
|||||||||||||||||||||||||||
Sbjct: 52 gagaaggggattgaggagattgggaag 78
>RF00884;MIR815;AACV01002220.1/8374-8275 39947:Oryza sativa Japonica
Group
Length = 100
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
|||||||||||||||||||||||||||
Sbjct: 74 gagaaggggattgaggagattgggaag 100
>RF00884;MIR815;AACV01011653.1/8108-8205 39947:Oryza sativa Japonica
Group
Length = 98
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
|||||||||||||||||||||||||||
Sbjct: 72 gagaaggggattgaggagattgggaag 98
>RF00884;MIR815;AACV01022467.1/15539-15458 39947:Oryza sativa
Japonica Group
Length = 82
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 79 agaaggggattgaggagattgggaag 104
||||||||||||||||||||||||||
Sbjct: 57 agaaggggattgaggagattgggaag 82
>RF00884;MIR815;AC144455.5/110578-110658 39947:Oryza sativa Japonica
Group
Length = 81
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattggg 101
||||||||||||||||||||||||
Sbjct: 55 gagaaggggattgaggagattggg 78
>RF00884;MIR815;ABRL01001579.1/2500-2411 65489:Oryza barthii
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
|||| ||||||||||||||||||||||
Sbjct: 64 gagagggggattgaggagattgggaag 90
>RF00884;MIR815;AAAA02008547.1/261-352 39946:Oryza sativa Indica
Group
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
|||| ||||||||||||||||||||||
Sbjct: 66 gagagggggattgaggagattgggaag 92
>RF00884;MIR815;AAAA02032459.1/15092-15173 39946:Oryza sativa Indica
Group
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
|||||||||||||||||||||| ||||
Sbjct: 56 gagaaggggattgaggagattgagaag 82
>RF00884;MIR815;AP005243.4/101841-101897 39947:Oryza sativa Japonica
Group
Length = 57
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 aggggattgaggagattgggaag 104
|||||||||||||||||||||||
Sbjct: 35 aggggattgaggagattgggaag 57
>RF00884;MIR815;AAAA02007943.1/48641-48553 39946:Oryza sativa Indica
Group
Length = 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 aggggattgaggagattgggaag 104
|||||||||||||||||||||||
Sbjct: 67 aggggattgaggagattgggaag 89
>RF00884;MIR815;AAAA02016932.1/1284-1202 39946:Oryza sativa Indica
Group
Length = 83
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
||||||||||||||||||||| |||||
Sbjct: 57 gagaaggggattgaggagattaggaag 83
>RF00884;MIR815;AL606651.3/23126-23039 39947:Oryza sativa Japonica
Group
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
||||||||||||||| |||||||||||
Sbjct: 62 gagaaggggattgagaagattgggaag 88
>RF00884;MIR815;AC118669.2/110482-110561 39947:Oryza sativa Japonica
Group
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
|||| ||||||||||||||||||||||
Sbjct: 54 gagagggggattgaggagattgggaag 80
>RF00884;MIR815;AAAA02000503.1/3753-3669 39946:Oryza sativa Indica
Group
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
||||||||||||| |||||||||||||
Sbjct: 59 gagaaggggattggggagattgggaag 85
>RF00884;MIR815;AAAA02001160.1/13395-13311 39946:Oryza sativa Indica
Group
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 gagaaggggattgaggagattgggaag 104
||||||||||| |||||||||||||||
Sbjct: 59 gagaaggggatcgaggagattgggaag 85
