miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00884;MIR815;AAAA02030926.1/109-192 39946:Oryza sativa Indica
Group
Length = 84
Score = 87.7 bits (44), Expect = 3e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 60 ctaagggtgtgtttgaggagaaggggattgaggagattgggaag 103
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 ctaagggtgtgtttgaggagaaggggattgaggagattgggaag 84
>RF00884;MIR815;AAAA02011740.1/7000-7076 39946:Oryza sativa Indica
Group
Length = 77
Score = 87.7 bits (44), Expect = 3e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 60 ctaagggtgtgtttgaggagaaggggattgaggagattgggaag 103
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 ctaagggtgtgtttgaggagaaggggattgaggagattgggaag 77
>RF00884;MIR815;AP008210.1/4631584-4631661 39947:Oryza sativa
Japonica Group
Length = 78
Score = 81.8 bits (41), Expect = 2e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 63 agggtgtgtttgaggagaaggggattgaggagattgggaag 103
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 agggtgtgtttgaggagaaggggattgaggagattgggaag 78
>RF00884;MIR815;AACV01022467.1/15539-15458 39947:Oryza sativa
Japonica Group
Length = 82
Score = 79.8 bits (40), Expect = 6e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 60 ctaagggtgtgtttgaggagaaggggattgaggagattgggaag 103
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 39 ctaagggtgtgtttgagaagaaggggattgaggagattgggaag 82
>RF00884;MIR815;AAAA02000503.1/3753-3669 39946:Oryza sativa Indica
Group
Length = 85
Score = 79.8 bits (40), Expect = 6e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 60 ctaagggtgtgtttgaggagaaggggattgaggagattgggaag 103
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 42 ctaagggtgtgtttgaggagaaggggattggggagattgggaag 85
>RF00884;MIR815;AAAA02007943.1/48641-48553 39946:Oryza sativa Indica
Group
Length = 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 61 taagggtgtgtttgaggagaaggggattgaggagattgggaag 103
||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 47 taagggtgtgtttgaggaggaggggattgaggagattgggaag 89
>RF00884;MIR815;AC144455.5/110578-110658 39947:Oryza sativa Japonica
Group
Length = 81
Score = 77.8 bits (39), Expect = 2e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 58 ctctaagggtgtgtttgaggagaaggggattgaggagattggg 100
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 36 ctcttagggtgtgtttgaggagaaggggattgaggagattggg 78
>RF00884;MIR815;AAAA02016069.1/1433-1357 39946:Oryza sativa Indica
Group
Length = 77
Score = 75.8 bits (38), Expect = 1e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 58 ctctaagggtgtgtttgaggagaaggggattgaggagattgggaag 103
|||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 32 ctcttagggagtgtttgaggagaaggggattgaggagattgggaag 77
>RF00884;MIR815;AACV01004584.1/4168-4092 39947:Oryza sativa Japonica
Group
Length = 77
Score = 75.8 bits (38), Expect = 1e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 58 ctctaagggtgtgtttgaggagaaggggattgaggagattgggaag 103
|||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 32 ctctaagggtgtgtttgaggaggagaggattgaggagattgggaag 77
>RF00884;MIR815;ABRL01001579.1/2500-2411 65489:Oryza barthii
Length = 90
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 63 agggtgtgtttgaggagaaggggattgaggagattgggaag 103
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 50 agggtgtgtttgaggagagggggattgaggagattgggaag 90
>RF00884;MIR815;AC060755.9/7831-7755 4530:Oryza sativa (rice)
Length = 77
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 64 gggtgtgtttgaggagaaggggattgaggagattgggaag 103
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 38 gggtgcgtttgaggagaaggggattgaggagattgggaag 77
>RF00884;MIR815;AAAA02016932.1/1284-1202 39946:Oryza sativa Indica
Group
Length = 83
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 60 ctaagggtgtgtttgaggagaaggggattgaggagattgggaag 103
||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 40 ctaagggagtgtttgaggagaaggggattgaggagattaggaag 83
>RF00884;MIR815;AACV01012991.1/18174-18095 39947:Oryza sativa
Japonica Group
Length = 80
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 60 ctaagggtgtgtttgaggagaaggggattgaggagattgg 99
|||||||||||||||||| |||||||||||||||||||||
Sbjct: 37 ctaagggtgtgtttgaggggaaggggattgaggagattgg 76
>RF00884;MIR815;AAAA02032459.1/15092-15173 39946:Oryza sativa Indica
Group
Length = 82
Score = 69.9 bits (35), Expect = 6e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 61 taagggtgtgtttgaggagaaggggattgaggagattgggaag 103
|||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 40 taagggtgtgttcgaggagaaggggattgaggagattgagaag 82
>RF00884;MIR815;AP003872.3/68621-68694 39947:Oryza sativa Japonica
Group
Length = 74
Score = 69.9 bits (35), Expect = 6e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 63 agggtgtgtttgaggagaaggggattgaggagatt 97
|||||||||||||||||||||||||||||||||||
Sbjct: 34 agggtgtgtttgaggagaaggggattgaggagatt 68
>RF00884;MIR815;AACV01002220.1/8374-8275 39947:Oryza sativa Japonica
Group
Length = 100
Score = 69.9 bits (35), Expect = 6e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 69 tgtttgaggagaaggggattgaggagattgggaag 103
|||||||||||||||||||||||||||||||||||
Sbjct: 66 tgtttgaggagaaggggattgaggagattgggaag 100
>RF00884;MIR815;AAAA02008547.1/261-352 39946:Oryza sativa Indica
Group
Length = 92
Score = 65.9 bits (33), Expect = 9e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 67 tgtgtttgaggagaaggggattgaggagattgggaag 103
|||||||||||||| ||||||||||||||||||||||
Sbjct: 56 tgtgtttgaggagagggggattgaggagattgggaag 92
>RF00884;MIR815;AL606651.3/23126-23039 39947:Oryza sativa Japonica
Group
Length = 88
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 63 agggtgtgtttgaggagaaggggattgaggagattgggaag 103
|||||| |||||||||||||||||||||| |||||||||||
Sbjct: 48 agggtgagtttgaggagaaggggattgagaagattgggaag 88
>RF00884;MIR815;AAAA02020690.1/11983-12066 39946:Oryza sativa Indica
Group
Length = 84
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 63 agggtgtgtttgaggagaaggggattgaggagattgggaag 103
||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 44 agggtgtgtttgaggggaaggggattgaggagattgagaag 84
>RF00884;MIR815;AC118669.2/110482-110561 39947:Oryza sativa Japonica
Group
Length = 80
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 63 agggtgtgtttgaggagaaggggattgaggagattgggaag 103
||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 40 agggtgtgtttaaggagagggggattgaggagattgggaag 80
>RF00884;MIR815;AAAA02001160.1/13395-13311 39946:Oryza sativa Indica
Group
Length = 85
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 63 agggtgtgtttgaggagaaggggattgaggagattgggaag 103
|||| |||||||||||||||||||| |||||||||||||||
Sbjct: 45 agggagtgtttgaggagaaggggatcgaggagattgggaag 85
>RF00884;MIR815;AACV01011653.1/8108-8205 39947:Oryza sativa Japonica
Group
Length = 98
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 63 agggtgtgtttgaggagaaggggattgaggagattgggaag 103
|||| |||||||| |||||||||||||||||||||||||||
Sbjct: 58 agggagtgtttgaagagaaggggattgaggagattgggaag 98
>RF00884;MIR815;AACV01003731.1/18044-18117 39947:Oryza sativa
Japonica Group
Length = 74
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 60 ctaagggtgtgtttgaggagaaggggattgaggagattg 98
|||||||||||||| || |||||||||||||||||||||
Sbjct: 31 ctaagggtgtgtttaagaagaaggggattgaggagattg 69
>RF00884;MIR815;AAAA02022054.1/2787-2709 39946:Oryza sativa Indica
Group
Length = 79
Score = 61.9 bits (31), Expect = 1e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 60 ctaagggtgtgtttgaggagaaggggattgaggagattgggaa 102
|||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 36 ctaaggttgtgtttgagtagaaggggattgaggagaatgggaa 78
>RF00884;MIR815;AP005243.4/101841-101897 39947:Oryza sativa Japonica
Group
Length = 57
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 71 tttgaggagaaggggattgaggagattgggaag 103
||||||||| |||||||||||||||||||||||
Sbjct: 25 tttgaggaggaggggattgaggagattgggaag 57
>RF00884;MIR815;AC134346.3/9712-9789 39947:Oryza sativa Japonica
Group
Length = 78
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 77 gagaaggggattgaggagattgggaag 103
|||||||||||||||||||||||||||
Sbjct: 52 gagaaggggattgaggagattgggaag 78
