miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42209_osa-MIR1428e:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 gcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgca 60
Query: 61 ctgcgtattgggggcttaccataagataatgccatgaatttgtcaagcgt 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgcgtattgggggcttaccataagataatgccatgaatttgtcaagcgt 110
>42207_osa-MIR1428d:mirbase
Length = 124
Score = 129 bits (65), Expect = 5e-31
Identities = 86/93 (92%)
Strand = Plus / Plus
Query: 8 gcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcactgcgta 67
||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||
Sbjct: 15 gcgaattcacaggccctatattgtggtatgaactgagtacgcgatgatttatggtgcata 74
Query: 68 ttgggggcttaccataagataatgccatgaatt 100
|||||||||||||||||||||||||||||||||
Sbjct: 75 ttgggggcttaccataagataatgccatgaatt 107
>42210_osa-MIR1428f:mirbase
Length = 109
Score = 127 bits (64), Expect = 2e-30
Identities = 97/108 (89%)
Strand = Plus / Plus
Query: 3 gcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcact 62
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 2 gctttgcgaattcacaggccctatcttgtggtatgaactaagtacgcgatgatttctggt 61
Query: 63 gcgtattgggggcttaccataagataatgccatgaatttgtcaagcgt 110
|||||||||||||||||||||||||||||| |||||| || ||||||
Sbjct: 62 acgtattgggggcttaccataagataatgccgtgaattcgtaaagcgt 109
>42204_osa-MIR1428a:mirbase
Length = 120
Score = 127 bits (64), Expect = 2e-30
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 11 aattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcactgcgtattg 70
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 18 aattcgcaggccctatcttgtggtatgaactgagtacgcgatgatttatcctgcgtattg 77
Query: 71 ggggcttaccataagataatgccatgaatttg 102
||||||||||||||||||| ||| ||||||||
Sbjct: 78 ggggcttaccataagataaagccgtgaatttg 109
>42203_osa-MIR1428a:mirbase
Length = 120
Score = 127 bits (64), Expect = 2e-30
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 11 aattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcactgcgtattg 70
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 18 aattcgcaggccctatcttgtggtatgaactgagtacgcgatgatttatcctgcgtattg 77
Query: 71 ggggcttaccataagataatgccatgaatttg 102
||||||||||||||||||| ||| ||||||||
Sbjct: 78 ggggcttaccataagataaagccgtgaatttg 109
>42211_osa-MIR1428g:mirbase
Length = 109
Score = 113 bits (57), Expect = 3e-26
Identities = 90/101 (89%)
Strand = Plus / Plus
Query: 2 cgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcac 61
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 cgctttgcgaattcacaggccctatcttgtggtatgaactgagtacgcgatgatttatgg 60
Query: 62 tgcgtattgggggcttaccataagataatgccatgaatttg 102
|| |||||||||||||||| |||||||||| ||||||||
Sbjct: 61 cgcatattgggggcttaccaaaagataatgctgtgaatttg 101
>42206_osa-MIR1428c:mirbase
Length = 142
Score = 105 bits (53), Expect = 7e-24
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 8 gcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcactgcgta 67
|||||||| ||||||||||| |||||||||||||| ||||||||| |||| ||| ||
Sbjct: 24 gcgaattcgcaggccctatcctgtggtatgaactgagtacgcgataatttatggtgcata 83
Query: 68 ttgggggcttaccataagataatgccatgaatt 100
|| ||||||||||||||||||||||||||||||
Sbjct: 84 ttaggggcttaccataagataatgccatgaatt 116
>42205_osa-MIR1428b:mirbase
Length = 124
Score = 103 bits (52), Expect = 3e-23
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 1 gcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgca 60
|||||| |||||||||| || | ||||||||||||||||||| ||||| |||||||
Sbjct: 8 gcgctttgcgaattcacgggtcttatcttgtggtatgaactgagtacgtaatgatttatg 67
Query: 61 ctgcgtattgggggcttaccataagataatgccatgaatt 100
||| |||||||||||||||||||||||||||||||||||
Sbjct: 68 gtgcatattgggggcttaccataagataatgccatgaatt 107
