miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01925;MIR1428;AK102950.1/85-208 39947:Oryza sativa Japonica Group
Length = 124
Score = 218 bits (110), Expect = 1e-56
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 gcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 gcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgca 67
Query: 61 ctgcgtattgggggcttaccataagataatgccatgaatttgtcaagcgt 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ctgcgtattgggggcttaccataagataatgccatgaatttgtcaagcgt 117
>RF01925;MIR1428;AP003208.3/119377-119500 39947:Oryza sativa
Japonica Group
Length = 124
Score = 127 bits (64), Expect = 3e-29
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 11 aattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcactgcgtattg 70
||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 18 aattcgcaggccctatcttgtggtatgaactgagtacgcgatgatttatcctgcgtattg 77
Query: 71 ggggcttaccataagataatgccatgaatttg 102
||||||||||||||||||| ||| ||||||||
Sbjct: 78 ggggcttaccataagataaagccgtgaatttg 109
>RF01925;MIR1428;CT829550.1/403-526 39946:Oryza sativa Indica Group
Length = 124
Score = 107 bits (54), Expect = 3e-23
Identities = 90/102 (88%)
Strand = Plus / Plus
Query: 1 gcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgca 60
||||||||||||||| || ||||||||||||||||||||||| | || |||| ||||
Sbjct: 8 gcgcttggcgaattcgcatgccctatcttgtggtatgaactgagcacacgataatttatg 67
Query: 61 ctgcgtattgggggcttaccataagataatgccatgaatttg 102
|||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 68 gtgcgtattgggggcttacaataagataatgccgtgaatttg 109
>RF01925;MIR1428;AP004317.1/76457-76580 39947:Oryza sativa Japonica
Group
Length = 124
Score = 103 bits (52), Expect = 5e-22
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 1 gcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgca 60
|||||| |||||||||| || | ||||||||||||||||||| ||||| |||||||
Sbjct: 8 gcgctttgcgaattcacgggtcttatcttgtggtatgaactgagtacgtaatgatttatg 67
Query: 61 ctgcgtattgggggcttaccataagataatgccatgaatt 100
||| |||||||||||||||||||||||||||||||||||
Sbjct: 68 gtgcatattgggggcttaccataagataatgccatgaatt 107
>RF01925;MIR1428;AP008209.1/20914589-20914712 39947:Oryza sativa
Japonica Group
Length = 124
Score = 93.7 bits (47), Expect = 5e-19
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 1 gcgcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgca 60
|||||| ||||||| ||| ||| ||||||||||||||||||| ||||||||| ||||
Sbjct: 8 gcgctttgcgaatttacatgccttatcttgtggtatgaactgagtacgcgataatttatg 67
Query: 61 ctgcgtattgggggcttaccataagataatg 91
|| |||||||||||||||||||||||||||
Sbjct: 68 gtgtgtattgggggcttaccataagataatg 98
>RF01925;MIR1428;AP008215.1/17601136-17601259 39947:Oryza sativa
Japonica Group
Length = 124
Score = 85.7 bits (43), Expect = 1e-16
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 8 gcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcactgcgta 67
||||||||||||| | |||||||||||||||||| ||||| |||||||| || |||
Sbjct: 15 gcgaattcacaggacatatcttgtggtatgaactaagtacgtgatgatttatggtgtgta 74
Query: 68 ttgggggcttaccataagataatgccatgaatttg 102
|||||||||||||||||||||| || ||||||||
Sbjct: 75 ttgggggcttaccataagataaggctgtgaatttg 109
>RF01925;MIR1428;AAAA02009114.1/9641-9518 39946:Oryza sativa Indica
Group
Length = 124
Score = 75.8 bits (38), Expect = 1e-13
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 17 caggccctatcttgtggtatgaactgggtacgcgatgatttgcactgcgtattgggggct 76
||||| ||||||||||||||||| || ||||||||||||| |||||||||||||||
Sbjct: 24 caggctctatcttgtggtatgaaatgagtacgcgatgattccttttgcgtattgggggct 83
Query: 77 taccataagataatgccatgaatttg 102
|||||||||||| ||| |||||||
Sbjct: 84 gaccataagataaagccgcgaatttg 109
>RF01925;MIR1428;AP008211.1/18802928-18802805 39947:Oryza sativa
Japonica Group
Length = 124
Score = 75.8 bits (38), Expect = 1e-13
Identities = 84/98 (85%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 13 ttcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcactgcgtattggg 72
||||||||||||| ||| |||||||||||| ||||||||||||| |||||||| |
Sbjct: 21 ttcacaggcccta-cttctggtatgaactgagtacgcgatgattcatggtgcgtattaga 79
Query: 73 ggcttaccataagataatgccatgaatttgtcaagcgt 110
||||||||||||||||||| | |||||| | |||||||
Sbjct: 80 ggcttaccataagataatgtcgtgaattcgccaagcgt 117
>RF01925;MIR1428;AP005676.3/52831-52709 39947:Oryza sativa
Japonica Group
Length = 123
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 10 gaattcacaggccctatcttgtggtatgaactgggtacgcgatgatt 56
|||||||||||| |||||||||||||||||||| |||| || |||||
Sbjct: 17 gaattcacaggctctatcttgtggtatgaactgagtacacggtgatt 63
