miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01925;MIR1428;AK102950.1/85-208 39947:Oryza sativa Japonica Group
Length = 124
Score = 127 bits (64), Expect = 3e-29
Identities = 97/108 (89%)
Strand = Plus / Plus
Query: 2 gctttgcgaattcacaggccctatcttgtggtatgaactaagtacgcgatgatttctggt 61
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 10 gcttggcgaattcacaggccctatcttgtggtatgaactgggtacgcgatgatttgcact 69
Query: 62 acgtattgggggcttaccataagataatgccgtgaattcgtaaagcgt 109
|||||||||||||||||||||||||||||| |||||| || ||||||
Sbjct: 70 gcgtattgggggcttaccataagataatgccatgaatttgtcaagcgt 117
>RF01925;MIR1428;AP003208.3/119377-119500 39947:Oryza sativa
Japonica Group
Length = 124
Score = 127 bits (64), Expect = 3e-29
Identities = 88/96 (91%)
Strand = Plus / Plus
Query: 4 tttgcgaattcacaggccctatcttgtggtatgaactaagtacgcgatgatttctggtac 63
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct: 12 tttgcaaattcgcaggccctatcttgtggtatgaactgagtacgcgatgatttatcctgc 71
Query: 64 gtattgggggcttaccataagataatgccgtgaatt 99
||||||||||||||||||||||||| ||||||||||
Sbjct: 72 gtattgggggcttaccataagataaagccgtgaatt 107
>RF01925;MIR1428;AP004317.1/76457-76580 39947:Oryza sativa Japonica
Group
Length = 124
Score = 127 bits (64), Expect = 3e-29
Identities = 97/108 (89%)
Strand = Plus / Plus
Query: 2 gctttgcgaattcacaggccctatcttgtggtatgaactaagtacgcgatgatttctggt 61
||||||||||||||| || | |||||||||||||||||| |||||| ||||||| ||||
Sbjct: 10 gctttgcgaattcacgggtcttatcttgtggtatgaactgagtacgtaatgatttatggt 69
Query: 62 acgtattgggggcttaccataagataatgccgtgaattcgtaaagcgt 109
| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 70 gcatattgggggcttaccataagataatgccatgaattcgcaaagcgt 117
>RF01925;MIR1428;AP008209.1/20914589-20914712 39947:Oryza sativa
Japonica Group
Length = 124
Score = 123 bits (62), Expect = 5e-28
Identities = 95/106 (89%)
Strand = Plus / Plus
Query: 2 gctttgcgaattcacaggccctatcttgtggtatgaactaagtacgcgatgatttctggt 61
|||||||||||| ||| ||| |||||||||||||||||| |||||||||| |||| ||||
Sbjct: 10 gctttgcgaatttacatgccttatcttgtggtatgaactgagtacgcgataatttatggt 69
Query: 62 acgtattgggggcttaccataagataatgccgtgaattcgtaaagc 107
||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct: 70 gtgtattgggggcttaccataagataatgtcgtaaattcgcaaagc 115
>RF01925;MIR1428;AP008215.1/17601136-17601259 39947:Oryza sativa
Japonica Group
Length = 124
Score = 121 bits (61), Expect = 2e-27
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 7 gcgaattcacaggccctatcttgtggtatgaactaagtacgcgatgatttctggtacgta 66
||||||||||||| | ||||||||||||||||||||||||| |||||||| |||| |||
Sbjct: 15 gcgaattcacaggacatatcttgtggtatgaactaagtacgtgatgatttatggtgtgta 74
Query: 67 ttgggggcttaccataagataatgccgtgaatt 99
|||||||||||||||||||||| || |||||||
Sbjct: 75 ttgggggcttaccataagataaggctgtgaatt 107
>RF01925;MIR1428;CT829550.1/403-526 39946:Oryza sativa Indica Group
Length = 124
Score = 115 bits (58), Expect = 1e-25
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 2 gctttgcgaattcacaggccctatcttgtggtatgaactaagtacgcgatgatttctggt 61
|||| |||||||| || |||||||||||||||||||||| || || |||| |||| ||||
Sbjct: 10 gcttggcgaattcgcatgccctatcttgtggtatgaactgagcacacgataatttatggt 69
Query: 62 acgtattgggggcttaccataagataatgccgtgaatt 99
|||||||||||||||| ||||||||||||||||||||
Sbjct: 70 gcgtattgggggcttacaataagataatgccgtgaatt 107
>RF01925;MIR1428;AP008211.1/18802928-18802805 39947:Oryza sativa
Japonica Group
Length = 124
Score = 99.6 bits (50), Expect = 7e-21
Identities = 81/90 (90%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 12 ttcacaggccctatcttgtggtatgaactaagtacgcgatgatttctggtacgtattggg 71
||||||||||||| ||| ||||||||||| |||||||||||||| |||| |||||| |
Sbjct: 21 ttcacaggcccta-cttctggtatgaactgagtacgcgatgattcatggtgcgtattaga 79
Query: 72 ggcttaccataagataatgccgtgaattcg 101
||||||||||||||||||| ||||||||||
Sbjct: 80 ggcttaccataagataatgtcgtgaattcg 109
>RF01925;MIR1428;AAAA02009114.1/9641-9518 39946:Oryza sativa Indica
Group
Length = 124
Score = 89.7 bits (45), Expect = 7e-18
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 3 ctttgcgaattcacaggccctatcttgtggtatgaactaagtacgcgatgatttctggta 62
|||||| |||| ||||| ||||||||||||||||| | |||||||||||||| || |
Sbjct: 11 ctttgcaaatttgcaggctctatcttgtggtatgaaatgagtacgcgatgattccttttg 70
Query: 63 cgtattgggggcttaccataagataatgccgtgaatt 99
||||||||||||| |||||||||||| |||| |||||
Sbjct: 71 cgtattgggggctgaccataagataaagccgcgaatt 107
>RF01925;MIR1428;AP005676.3/52831-52709 39947:Oryza sativa
Japonica Group
Length = 123
Score = 71.9 bits (36), Expect = 2e-12
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 9 gaattcacaggccctatcttgtggtatgaactaagtacgcgatgatttctggtacgtatt 68
|||||||||||| ||||||||||||||||||| ||||| || ||| || |||| |||||
Sbjct: 17 gaattcacaggctctatcttgtggtatgaactgagtacacggtga-ttatggtgagtatt 75
Query: 69 gggggcttaccataag 84
|||| |||||||||||
Sbjct: 76 ggggtcttaccataag 91
