miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01911;MIR2118;AL606706.3/87890-87721 39947:Oryza sativa Japonica
Group
Length = 170
Score = 274 bits (138), Expect = 3e-73
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 1 aaggaacacctgagaacaataggcatgggaggtattgggaaaacacaggaacatattgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 aaggaacacctgagaacaataggcatgggaggtattgggaaaacacaggaacatattgtg 94
Query: 61 acccctaattttaaagggaaataatggttgaggctttcctccatgttcccatgcctaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 acccctaattttaaagggaaataatggttgaggctttcctccatgttcccatgcctaatg 34
Query: 121 ctcttaggtgctcttttt 138
||||||||||||||||||
Sbjct: 33 ctcttaggtgctcttttt 16
>RF01911;MIR2118;ABXC01004282.1/27391-27234 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 1 aaggaacacctgagaacaataggcatgggaggtattgggaaa 42
||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 142 aaggaacacctaagaacaataggcatgggaggcattgggaaa 101
Score = 50.1 bits (25), Expect = 8e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 94 ctttcctccatgttcccatgcctaatgctcttaggtgctcttttt 138
|||||||||||||||||||||| || || ||||| | ||||||||
Sbjct: 60 ctttcctccatgttcccatgcccaacgcccttagatactcttttt 16
>RF01911;MIR2118;AAAA02013919.1/23719-23885 39946:Oryza sativa
Indica Group
Length = 167
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 93 gctttcctccatgttcccatgcctaatgctcttaggtgctct 134
||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 60 gctttcctccatgttcccatgcccactgctcttaggtgctct 19
>RF01911;MIR2118;ABXC01004282.1/24617-24453 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 92 ggctttcctccatgttcccatgcctaatgctcttag 127
|||||||||||||||||||||||| | |||||||||
Sbjct: 61 ggctttcctccatgttcccatgcccactgctcttag 26
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 agaacaataggcatgggaggtattgggaaa 42
|||||||||||||||||||| || ||||||
Sbjct: 137 agaacaataggcatgggaggcatcgggaaa 108
>RF01911;MIR2118;ABXC01004286.1/20347-20177 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 91 aggctttcctccatgttcccatgcctaatgctcttagg 128
|||||||||||||||||||||| |||| || |||||||
Sbjct: 63 aggctttcctccatgttcccattcctactgttcttagg 26
>RF01911;MIR2118;ABXC01004286.1/22374-22204 4558:Sorghum bicolor
(sorghum)
Length = 171
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 91 aggctttcctccatgttcccatgcctaatgctcttagg 128
|||||||||||||||||||||| || | ||||||||||
Sbjct: 63 aggctttcctccatgttcccattcccactgctcttagg 26
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 agaacaataggcatgggaggtattgggaaa 42
||||||||||| |||||||| |||||||||
Sbjct: 143 agaacaataggaatgggaggcattgggaaa 114
>RF01911;MIR2118;AAAA02013919.1/7268-7439 39946:Oryza sativa Indica
Group
Length = 172
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 91 aggctttcctccatgttcccatgcctaatgctcttagg 128
|||||||||||||||||||||| || | ||||||||||
Sbjct: 63 aggctttcctccatgttcccattcccactgctcttagg 26
>RF01911;MIR2118;ABXC01004286.1/17945-17773 4558:Sorghum bicolor
(sorghum)
Length = 173
Score = 50.1 bits (25), Expect = 8e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 92 ggctttcctccatgttcccatgcctaatgctcttagg 128
||||||||||||||||||||| || | ||||||||||
Sbjct: 62 ggctttcctccatgttcccattcccactgctcttagg 26
>RF01911;MIR2118;AACV01009812.1/26461-26632 39947:Oryza sativa
Japonica Group
Length = 172
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 95 tttcctccatgttcccatgcctaatgctcttag 127
|||||||||||||||||||||| |||||||||
Sbjct: 58 tttcctccatgttcccatgcctgctgctcttag 26
>RF01911;MIR2118;AL606706.3/90746-90578 39947:Oryza sativa Japonica
Group
Length = 169
Score = 50.1 bits (25), Expect = 8e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 1 aaggaacacctgagaacaataggcatgggaggtattgggaaaaca 45
||||| || ||||||||||||||||||||||| || ||||||||
Sbjct: 153 aaggagcatctgagaacaataggcatgggaggcatcaggaaaaca 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 92 ggctttcctccatgttcccatgcc 115
||||||||||||||||||||||||
Sbjct: 61 ggctttcctccatgttcccatgcc 38
>RF01911;MIR2118;ABXC01004282.1/22775-22606 4558:Sorghum bicolor
(sorghum)
Length = 170
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 15 aacaataggcatgggaggtattgggaaa 42
|||||||||||||||||| |||||||||
Sbjct: 140 aacaataggcatgggaggcattgggaaa 113
>RF01911;MIR2118;ABXC01004286.1/22135-21991 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 aaggaacacctgagaacaataggcatgggagg 32
||||| ||||| ||||||||||||||||||||
Sbjct: 129 aaggagcacctaagaacaataggcatgggagg 98
>RF01911;MIR2118;AC135459.3/87322-87489 39947:Oryza sativa Japonica
Group
Length = 168
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 96 ttcctccatgttcccatgcctaatgctcttag 127
|||||||||||||||||||| | |||||||||
Sbjct: 57 ttcctccatgttcccatgcccactgctcttag 26
>RF01911;MIR2118;AP008210.1/21667363-21667201 39947:Oryza sativa
Japonica Group
Length = 163
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 92 ggctttcctccatgttcccatgcctaatgctcttag 127
||||||||| ||||||||||| |||| |||||||||
Sbjct: 61 ggctttccttcatgttcccattcctactgctcttag 26
>RF01911;MIR2118;AP008210.1/21663107-21662944 39947:Oryza sativa
Japonica Group
Length = 164
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 92 ggctttcctccatgttcccatgcctaatgctcttag 127
||||||||| ||||||||||| |||| |||||||||
Sbjct: 62 ggctttccttcatgttcccattcctactgctcttag 27
>RF01911;MIR2118;ABXC01004282.1/23045-22871 4558:Sorghum bicolor
(sorghum)
Length = 175
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 93 gctttcctccatgttcccatgcctaatgctcttag 127
|||||||||||||||||||| || | |||||||||
Sbjct: 61 gctttcctccatgttcccattcccactgctcttag 27
>RF01911;MIR2118;AP008210.1/21658799-21658648 39947:Oryza sativa
Japonica Group
Length = 152
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 94 ctttcctccatgttcccatgcctaatgctcttag 127
||||||||||||||||||| |||| ||||||||
Sbjct: 58 ctttcctccatgttcccattcctacagctcttag 25
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 1 aaggaacacctgagaacaataggcatgggaggtattgggaaa 42
||||| ||||| ||||||||||| |||||||| ||| |||||
Sbjct: 136 aaggagcacctaagaacaataggaatgggaggcattaggaaa 95
