miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49186_osa-miR1882h:pmrd
Length = 193
Score = 383 bits (193), Expect = e-107
Identities = 193/193 (100%)
Strand = Plus / Plus
Query: 1 catgtctagaaatctgttatcgttaccaatttcctagattgctttcaaggtcatttcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctagaaatctgttatcgttaccaatttcctagattgctttcaaggtcatttcttt 60
Query: 61 ctgaaaccccgttcccataaattcagtatccaaagctggttgttgtatctatggaaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgaaaccccgttcccataaattcagtatccaaagctggttgttgtatctatggaaataa 120
Query: 121 gggtttcagaatgaaatgatcttggacgcaatctaggagtttgctgacgataacgttagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gggtttcagaatgaaatgatcttggacgcaatctaggagtttgctgacgataacgttagg 180
Query: 181 ggtctagtgcaat 193
|||||||||||||
Sbjct: 181 ggtctagtgcaat 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 121 gggtttcagaatgaaatgatcttggacgcaatctagga 158
||||||||||| ||||||| |||| | |||||||||||
Sbjct: 69 gggtttcagaaagaaatgaccttgaaagcaatctagga 32
Score = 44.1 bits (22), Expect = 4e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 32 tcctagattgctttcaaggtcatttctttctgaaaccc 69
||||||||||| | |||| ||||||| |||||||||||
Sbjct: 158 tcctagattgcgtccaagatcatttcattctgaaaccc 121
>49182_osa-miR1882d:pmrd
Length = 160
Score = 224 bits (113), Expect = 2e-59
Identities = 143/153 (93%)
Strand = Plus / Plus
Query: 15 tgttatcgttaccaatttcctagattgctttcaaggtcatttctttctgaaaccccgttc 74
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttaggaaaccccattc 60
Query: 75 ccataaattcagtatccaaagctggttgttgtatctatggaaataagggtttcagaatga 134
||||||||||||||||||||| |||||||||||||||||| |||||||||| | || ||
Sbjct: 61 ccataaattcagtatccaaagatggttgttgtatctatgggaataagggttccctaacga 120
Query: 135 aatgatcttggacgcaatctaggagtttgctga 167
|||||||||||||||||||||||||||||||||
Sbjct: 121 aatgatcttggacgcaatctaggagtttgctga 153
>49180_osa-miR1882b:pmrd
Length = 160
Score = 222 bits (112), Expect = 8e-59
Identities = 148/160 (92%)
Strand = Plus / Plus
Query: 15 tgttatcgttaccaatttcctagattgctttcaaggtcatttctttctgaaaccccgttc 74
|||||||||||||||| ||||||||||||||||||||||||||||| || |||||| |||
Sbjct: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttatggaaccccattc 60
Query: 75 ccataaattcagtatccaaagctggttgttgtatctatggaaataagggtttcagaatga 134
||||||||| | ||||||||| |||||| ||||||||||| |||||||||| || |||||
Sbjct: 61 ccataaatttattatccaaagatggttgctgtatctatgggaataagggttccataatga 120
Query: 135 aatgatcttggacgcaatctaggagtttgctgacgataac 174
||||||||||||||||||||||||||||||||| ||||||
Sbjct: 121 aatgatcttggacgcaatctaggagtttgctgatgataac 160
>49097_osa-miR1317:pmrd
Length = 161
Score = 208 bits (105), Expect = 1e-54
Identities = 144/157 (91%)
Strand = Plus / Plus
Query: 17 ttatcgttaccaatttcctagattgctttcaaggtcatttctttctgaaaccccgttccc 76
|||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 77 ataaattcagtatccaaagctggttgttgtatctatggaaataagggtttcagaatgaaa 136
|||||||||||||||||||||||||| ||||||||||| |||||||||| | | ||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaa 122
Query: 137 tgatcttggacgcaatctaggagtttgctgacgataa 173
|||||||||||| ||||||||||||||||||||||||
Sbjct: 123 tgatcttggacgtaatctaggagtttgctgacgataa 159
>49096_osa-miR1317:pmrd
Length = 161
Score = 208 bits (105), Expect = 1e-54
Identities = 144/157 (91%)
Strand = Plus / Plus
Query: 17 ttatcgttaccaatttcctagattgctttcaaggtcatttctttctgaaaccccgttccc 76
|||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 77 ataaattcagtatccaaagctggttgttgtatctatggaaataagggtttcagaatgaaa 136
|||||||||||||||||||||||||| ||||||||||| |||||||||| | | ||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaa 122
Query: 137 tgatcttggacgcaatctaggagtttgctgacgataa 173
|||||||||||| ||||||||||||||||||||||||
Sbjct: 123 tgatcttggacgtaatctaggagtttgctgacgataa 159
>49095_osa-miR1317:pmrd
Length = 161
Score = 208 bits (105), Expect = 1e-54
Identities = 144/157 (91%)
Strand = Plus / Plus
Query: 17 ttatcgttaccaatttcctagattgctttcaaggtcatttctttctgaaaccccgttccc 76
|||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||||
Sbjct: 3 ttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattccc 62
Query: 77 ataaattcagtatccaaagctggttgttgtatctatggaaataagggtttcagaatgaaa 136
|||||||||||||||||||||||||| ||||||||||| |||||||||| | | ||||
Sbjct: 63 ataaattcagtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaa 122
Query: 137 tgatcttggacgcaatctaggagtttgctgacgataa 173
|||||||||||| ||||||||||||||||||||||||
Sbjct: 123 tgatcttggacgtaatctaggagtttgctgacgataa 159
>49185_osa-miR1882g:pmrd
Length = 158
Score = 202 bits (102), Expect = 7e-53
Identities = 145/158 (91%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 17 ttatcgttaccaatttcctagattgctttcaaggtcatttctttctgaaaccccgttccc 76
||||||||||||| ||||||||||||||||||||||||||||| || | |||| |||||
Sbjct: 2 ttatcgttaccaacatcctagattgctttcaaggtcatttctttatgga-ccccattccc 60
Query: 77 ataaattcagtatccaaagctggttgttgtatctatggaaataagggtttcagaatgaaa 136
||||||||||||||||||| |||||| ||||||||||| |||||||||| || || ||||
Sbjct: 61 ataaattcagtatccaaagatggttgctgtatctatgggaataagggttccataacgaaa 120
Query: 137 tgatcttggacgcaatctaggagtttgctgacgataac 174
||||||||||||||||||||||||||||||| ||||||
Sbjct: 121 tgatcttggacgcaatctaggagtttgctgatgataac 158
>49184_osa-miR1882f:pmrd
Length = 160
Score = 192 bits (97), Expect = 7e-50
Identities = 146/161 (90%), Gaps = 1/161 (0%)
Strand = Plus / Plus
Query: 15 tgttatcgttaccaatttcctagattgctttcaaggtcatttctttctgaaaccccgttc 74
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||| |||
Sbjct: 1 tgttatcgttaccaatatcctagattgctttcaaggtcatttctttagggaaccccattc 60
Query: 75 ccataaattcagtatccaaagctggttgttgtatctatggaaataagggtttcagaatga 134
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||| || ||
Sbjct: 61 ccataaattcagtatccaaagctggttgctgtatctatgggaataaggg-ttcctaacga 119
Query: 135 aatgatcttggacgcaatctaggagtttgctgacgataacg 175
|||||||||||| ||||||| ||| ||||| ||||||||||
Sbjct: 120 aatgatcttggatgcaatcttggattttgcggacgataacg 160
>49179_osa-miR1882a:pmrd
Length = 159
Score = 186 bits (94), Expect = 4e-48
Identities = 146/163 (89%), Gaps = 4/163 (2%)
Strand = Plus / Plus
Query: 13 tctgttatcgttaccaatttcctagattgctttcaaggtcatttctttctgaaaccccgt 72
|||||||||| ||||||| ||||||||||||||||||||||||||||| || || ||| |
Sbjct: 1 tctgttatcggtaccaatatcctagattgctttcaaggtcatttctttatggaagcccat 60
Query: 73 tcccataaattcagtatccaaagctggttgttgtatctatggaaataagggtttcagaat 132
||||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||
Sbjct: 61 tcccataaattcagtatccaaagatggttgttgtatct----aaataggggttccataac 116
Query: 133 gaaatgatcttggacgcaatctaggagtttgctgacgataacg 175
|||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 117 gaaatgatcttggatgcaatctaggagtttgctgatgataacg 159
>49183_osa-miR1882e:pmrd
Length = 141
Score = 176 bits (89), Expect = 4e-45
Identities = 128/141 (90%)
Strand = Plus / Plus
Query: 26 ccaatttcctagattgctttcaaggtcatttctttctgaaaccccgttcccataaattca 85
||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct: 1 ccaatatcctagattgctttcaaggtcatttctttagggaaccccattcccataaattca 60
Query: 86 gtatccaaagctggttgttgtatctatggaaataagggtttcagaatgaaatgatcttgg 145
||||||||||||||||| ||||||||||| |||||||||| | | |||||||||||||
Sbjct: 61 gtatccaaagctggttgctgtatctatgggaataagggttcccttacgaaatgatcttgg 120
Query: 146 acgcaatctaggagtttgctg 166
||| |||||||||||||||||
Sbjct: 121 acgtaatctaggagtttgctg 141
>49181_osa-miR1882c:pmrd
Length = 130
Score = 165 bits (83), Expect = 2e-41
Identities = 119/130 (91%), Gaps = 2/130 (1%)
Strand = Plus / Plus
Query: 32 tcctagattgctttcaaggtcatttctttctgaaaccccgttcccataaattcagtatcc 91
||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 3 tcctagattgctttcaaggtcatttctttagggaaccccattcccataaattcagtatcc 62
Query: 92 aaagctggttgttgtatctatggaaataagggtttcagaatgaaatgatcttggacgcaa 151
||||||||||||||||||||||| | ||||||| | || |||||||||||||||||||
Sbjct: 63 aaagctggttgttgtatctatggga--aagggttccctaacgaaatgatcttggacgcaa 120
Query: 152 tctaggagtt 161
||||||||||
Sbjct: 121 tctaggagtt 130
