miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49187_osa-miR1883a:pmrd
Length = 118
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 acccgtcactggtatctagtcacctgtgacgggccgagaatggaacccgtcaaagggaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acccgtcactggtatctagtcacctgtgacgggccgagaatggaacccgtcaaagggaca 60
Query: 61 cctctgacgggttccattctcgatccgtcacaggtgactagatgcctgtgacggcccg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctctgacgggttccattctcgatccgtcacaggtgactagatgcctgtgacggcccg 118
Score = 111 bits (56), Expect = 1e-25
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 3 ccgtcactggtatctagtcacctgtgacgggccgagaatggaacccgtcaaagggacacc 62
||||||| || ||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct: 114 ccgtcacaggcatctagtcacctgtgacggatcgagaatggaacccgtcagaggtgtccc 55
Query: 63 tctgacgggttccattctcgatccgtcacaggtgactagatgcctgtgacgg 114
| |||||||||||||||||| ||||||||||||||||||| || |||||||
Sbjct: 54 tttgacgggttccattctcggcccgtcacaggtgactagataccagtgacgg 3
>49188_osa-miR1883b:pmrd
Length = 136
Score = 95.6 bits (48), Expect = 7e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 2 cccgtcactggtatctagtcacctgtgacgggccgagaatggaacccgtcaaagggacac 61
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 10 cccgtcacaggtatctagtcacctgtgacgggccgagaatggaatccgtcaaaggaacac 69
Score = 67.9 bits (34), Expect = 2e-12
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 65 tgacgggttccattctcgatccgtcacaggtgactagatgcctgtgacgg 114
|||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 60 tgacggattccattctcggcccgtcacaggtgactagatacctgtgacgg 11
>51305_osa-miRf12090-akr:pmrd
Length = 100
Score = 69.9 bits (35), Expect = 4e-13
Identities = 85/99 (85%), Gaps = 2/99 (2%)
Strand = Plus / Minus
Query: 11 ggtatctagtcacctgtgacgggccgagaa-tggaacccgtcaaagggacacctctgacg 69
||||||||||||| ||||||||||| |||| ||||| ||| |||||| ||||||||
Sbjct: 98 ggtatctagtcacttgtgacgggcc-agaagtggaagccgacaaaggtgtttctctgacg 40
Query: 70 ggttccattctcgatccgtcacaggtgactagatgcctg 108
| ||||||||| || ||||||||||||||||||| ||||
Sbjct: 39 gattccattctagacccgtcacaggtgactagatacctg 1
Score = 61.9 bits (31), Expect = 1e-10
Identities = 84/99 (84%), Gaps = 2/99 (2%)
Strand = Plus / Plus
Query: 11 ggtatctagtcacctgtgacgggccgagaatggaacccgtcaaagggacacctctgacgg 70
||||||||||||||||||||||| | ||||||||| |||||| || |||||| || |||
Sbjct: 3 ggtatctagtcacctgtgacgggtctagaatggaatccgtcagagaaacacctttgtcgg 62
Query: 71 gttcca-ttctcgatccgtcacaggtgactagatgcctg 108
||||| |||| | |||||||| |||||||||| ||||
Sbjct: 63 cttccacttct-ggcccgtcacaagtgactagatacctg 100
>50492_osa-miRf11277-akr:pmrd
Length = 112
Score = 50.1 bits (25), Expect = 4e-07
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 11 ggtatctagtcacctgtgacgggccgagaatggaacccgtcaaagggacacctctgacgg 70
|||||| ||||| |||| | ||||||| |||| ||||||||| | | ||||||||| | |
Sbjct: 9 ggtatcaagtcagctgttatgggccgaaaatgaaacccgtcagatgaacacctctgtcag 68
Query: 71 gttccattctcgatccgtcacaggtgactagatgcctgtga 111
||||| | || ||||||||||||||| ||| |||||||
Sbjct: 69 attccacttccggcccgtcacaggtgacttgatacctgtga 109
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 6 tcactggtatctagtcacctgtgacgggccg 36
|||| |||||| |||||||||||||||||||
Sbjct: 109 tcacaggtatcaagtcacctgtgacgggccg 79
>49739_osa-miRf10524-akr:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 18 agtcacctgtgacgggccgagaatggaacccgtcaaagg 56
||||||||| |||||| | | ||||||||||||||||||
Sbjct: 109 agtcacctgagacgggtcaaaaatggaacccgtcaaagg 71
Score = 42.1 bits (21), Expect = 9e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 59 cacctctgacgggttccattctcgatccgtcacaggtgact 99
||||| |||||||||||||| | || ||||| |||||||||
Sbjct: 69 cacctttgacgggttccatttttgacccgtctcaggtgact 109
>49232_osa-miRf10017-akr:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 6e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 59 cacctctgacgggttccattctcgatccgtcacaggtgactag 101
||||| |||||||||| ||| || | |||||||||||||||||
Sbjct: 59 cacctgtgacgggttctattttcaacccgtcacaggtgactag 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 11 ggtatctagtcacctgtgacgggccgagaatggaacccgtca 52
|||| |||||||||||||||||| || ||| ||||||||||
Sbjct: 106 ggtaactagtcacctgtgacgggttgaaaatagaacccgtca 65
>51101_osa-miRf11886-akr:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1 acccgtcactggtatctagtcacctgtga 29
||||||||| |||| ||||||||||||||
Sbjct: 79 acccgtcacaggtaactagtcacctgtga 51
>50616_osa-miRf11401-akr:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 ggtatctagtcacctgtgacgggcc 35
|||| ||||||||||||||||||||
Sbjct: 70 ggtaactagtcacctgtgacgggcc 46
