miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AP006171.2/9738-9583 39947:Oryza sativa Japonica
Group
Length = 156
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 118 attctttttgggacggagggagtactg 144
|||||||||||||||||||||||||||
Sbjct: 28 attctttttgggacggagggagtactg 2
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 ttctttttgggacggagggagta 141
|||||||||||||||||||||||
Sbjct: 130 ttctttttgggacggagggagta 152
>RF00906;MIR1122;AACV01014823.1/10890-11017 39947:Oryza sativa
Japonica Group
Length = 128
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 115 ttaattctttttgggacggagggagt 140
||||||||||||||||||||||||||
Sbjct: 98 ttaattctttttgggacggagggagt 123
>RF00906;MIR1122;AACV01018362.1/12376-12241 39947:Oryza sativa
Japonica Group
Length = 136
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 118 attctttttgggacggagggagtac 142
|||||||||||||||||||||||||
Sbjct: 28 attctttttgggacggagggagtac 4
>RF00906;MIR1122;AACV01015141.1/40750-40841 39947:Oryza sativa
Japonica Group
Length = 92
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 119 ttctttttgggacggagggagtact 143
|||||||||||||||||||||||||
Sbjct: 27 ttctttttgggacggagggagtact 3
>RF00906;MIR1122;AAAA02033731.1/3125-3012 39946:Oryza sativa Indica
Group
Length = 114
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 115 ttaattctttttgggacggaggga 138
||||||||||||||||||||||||
Sbjct: 83 ttaattctttttgggacggaggga 106
>RF00906;MIR1122;AAAA02032841.1/5550-5441 39946:Oryza sativa Indica
Group
Length = 110
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 118 attctttttgggacggagggagta 141
||||||||||||||||||||||||
Sbjct: 28 attctttttgggacggagggagta 5
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gatactccctccgtcccaaaaa 50
||||||||||||||||||||||
Sbjct: 3 gatactccctccgtcccaaaaa 24
>RF01058;MIR806;ABXC01000117.1/227422-227180 4558:Sorghum bicolor
(sorghum)
Length = 243
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 120 tctttttgggacggagggagtac 142
|||||||||||||||||||||||
Sbjct: 23 tctttttgggacggagggagtac 1
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 tctttttgggacggagggagtac 142
|||||||||||||||||||||||
Sbjct: 221 tctttttgggacggagggagtac 243
>RF00906;MIR1122;ABXC01002132.1/397783-397672 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 tctttttgggacggagggagtac 142
|||||||||||||||||||||||
Sbjct: 87 tctttttgggacggagggagtac 109
>RF00906;MIR1122;AP008214.1/25592318-25592474 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 28 agatactccctccgtcccaaaaa 50
|||||||||||||||||||||||
Sbjct: 156 agatactccctccgtcccaaaaa 134
>RF00906;MIR1122;AACV01013045.1/9312-9408 39947:Oryza sativa
Japonica Group
Length = 97
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 122 tttttgggacggagggagtactg 144
|||||||||||||||||||||||
Sbjct: 74 tttttgggacggagggagtactg 96
>RF00906;MIR1122;AP004259.2/7530-7458 39947:Oryza sativa Japonica
Group
Length = 73
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 ttctttttgggacggagggagta 141
|||||||||||||||||||||||
Sbjct: 47 ttctttttgggacggagggagta 69
>RF00906;MIR1122;AP003883.3/40264-40104 39947:Oryza sativa
Japonica Group
Length = 161
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 gagatactccctccgtcccaaaa 49
|||||||||||||||||||||||
Sbjct: 1 gagatactccctccgtcccaaaa 23
>RF00906;MIR1122;AP004761.3/79165-79009 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 agatactccctccgtcccaaaaa 50
|||||||||||||||||||||||
Sbjct: 2 agatactccctccgtcccaaaaa 24
>RF01058;MIR806;ABXC01006731.1/44817-44575 4558:Sorghum bicolor
(sorghum)
Length = 243
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 120 tctttttgggacggagggagta 141
||||||||||||||||||||||
Sbjct: 23 tctttttgggacggagggagta 2
>RF01058;MIR806;ABXC01001640.1/20344-20113 4558:Sorghum bicolor
(sorghum)
Length = 232
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 120 tctttttgggacggagggagta 141
||||||||||||||||||||||
Sbjct: 23 tctttttgggacggagggagta 2
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 tctttttgggacggagggagta 141
||||||||||||||||||||||
Sbjct: 210 tctttttgggacggagggagta 231
>RF01058;MIR806;AACV01000141.1/35700-35458 39947:Oryza sativa
Japonica Group
Length = 243
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 120 tctttttgggacggagggagta 141
||||||||||||||||||||||
Sbjct: 23 tctttttgggacggagggagta 2
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 28 agatactccctccgtcccaaaa 49
||||||||||||||||||||||
Sbjct: 124 agatactccctccgtcccaaaa 103
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 28 agatactccctccgtcccaaaa 49
||||||||||||||||||||||
Sbjct: 135 agatactccctccgtcccaaaa 114
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 81 tttttgggacggagggagtact 102
>RF00906;MIR1122;AAAA02003310.1/4753-4639 39946:Oryza sativa Indica
Group
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtact 3
>RF00906;MIR1122;AP008217.1/1240656-1240769 39947:Oryza sativa
Japonica Group
Length = 114
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 91 tttttgggacggagggagtact 112
>RF00906;MIR1122;AACV01024885.1/21195-21061 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 123 ttttgggacggagggagtactg 144
||||||||||||||||||||||
Sbjct: 113 ttttgggacggagggagtactg 134
>RF00906;MIR1122;AAAA02020504.1/20392-20526 39946:Oryza sativa
Indica Group
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 28 agatactccctccgtcccaaaa 49
||||||||||||||||||||||
Sbjct: 134 agatactccctccgtcccaaaa 113
>RF00906;MIR1122;CR855084.1/66223-66112 4530:Oryza sativa (rice)
Length = 112
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtact 3
>RF00906;MIR1122;AAAA02030644.1/62271-62160 39946:Oryza sativa
Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtact 3
>RF00906;MIR1122;AAAA02014698.1/33454-33543 39946:Oryza sativa
Indica Group
Length = 90
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtact 3
>RF00906;MIR1122;AP008210.1/17746245-17746133 39947:Oryza sativa
Japonica Group
Length = 113
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtact 3
>RF00906;MIR1122;AACV01025370.1/11561-11672 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtact 3
>RF00906;MIR1122;AP008212.1/25859487-25859353 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 28 agatactccctccgtcccaaaa 49
||||||||||||||||||||||
Sbjct: 134 agatactccctccgtcccaaaa 113
>RF00906;MIR1122;AACV01010622.1/23023-23178 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtact 3
>RF00906;MIR1122;CR855173.1/25497-25408 4530:Oryza sativa (rice)
Length = 90
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtact 3
>RF00906;MIR1122;AACV01024204.1/3332-3459 39947:Oryza sativa
Japonica Group
Length = 128
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtact 3
>RF00906;MIR1122;AL772423.4/33732-33621 4530:Oryza sativa (rice)
Length = 112
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtact 3
>RF00906;MIR1122;AC025783.10/100980-101130 39947:Oryza sativa
Japonica Group
Length = 151
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 128 tttttgggacggagggagtact 149
>RF00906;MIR1122;AACV01017892.1/4248-4093 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 133 tttttgggacggagggagtact 154
>RF00906;MIR1122;AC123519.2/136575-136462 39947:Oryza sativa
Japonica Group
Length = 114
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 122 tttttgggacggagggagtact 143
||||||||||||||||||||||
Sbjct: 24 tttttgggacggagggagtact 3
