miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
(sorghum)
Length = 198
Score = 331 bits (167), Expect = 3e-90
Identities = 170/171 (99%)
Strand = Plus / Plus
Query: 44 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 70
Query: 104 gatgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgac 163
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 71 gatgcctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgac 130
Query: 164 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 181
>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
Length = 200
Score = 276 bits (139), Expect = 1e-73
Identities = 169/178 (94%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 39 gatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggt 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggt 65
Query: 99 tcatggatgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgt 156
|||||||| ||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct: 66 tcatggatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgt 125
Query: 157 gcatgacccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 126 gcatgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggag 183
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 125 bits (63), Expect = 3e-28
Identities = 143/169 (84%), Gaps = 8/169 (4%)
Strand = Plus / Plus
Query: 46 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 106 tgcctctctggtgcagcaatgactaatgctcacctgcacttgcatgggtgtgcatgaccc 165
| ||||| |||| ||| | | ||| ||||||||||||||| ||||||||||
Sbjct: 73 tacctctgcagtgc----atgtcgtaggct----tgcacttgcatgggtttgcatgaccc 124
Query: 166 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
|||||||||||||||||| |||| | || ||||||||||||||||||
Sbjct: 125 gggagatgaacccaccattgtcttcctcttatgcttggattgaagggag 173
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 91.7 bits (46), Expect = 4e-18
Identities = 140/170 (82%), Gaps = 1/170 (0%)
Strand = Plus / Plus
Query: 46 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 106 tgcctctctggtgca-gcaatgactaatgctcacctgcacttgcatgggtgtgcatgacc 164
| ||||| ||||| | | | | || ||||||||||||||||| |||||||||
Sbjct: 73 tacctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacc 132
Query: 165 cgggagatgaacccaccatcatctttccctcgtgcttggattgaagggag 214
||||||||||||||||||| |||| | || || |||||||||||||||
Sbjct: 133 cgggagatgaacccaccattgtcttcctctattgattggattgaagggag 182
>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
Length = 191
Score = 85.7 bits (43), Expect = 3e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 46 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 106 tgcctct 112
| |||||
Sbjct: 73 tacctct 79
Score = 63.9 bits (32), Expect = 1e-09
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 138 cctgcacttgcatgggtgtgcatgacccgggagatgaacc 177
||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 98 cctgcacttgcatgggtttgcatgacctgggagatgaacc 137
>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
Length = 193
Score = 85.7 bits (43), Expect = 3e-16
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 43 gaagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttca 101
||||||||||||| ||||||||| |||||| ||||||||| || ||||||||||||||||
Sbjct: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
Query: 102 tggatgcctct 112
||||| |||||
Sbjct: 70 tggatacctct 80
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 77.8 bits (39), Expect = 6e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 46 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 105
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 106 tgcctct 112
| |||||
Sbjct: 73 tacctct 79
