miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABXC01001444.1/103334-103247 4558:Sorghum bicolor
(sorghum)
Length = 88
Score = 174 bits (88), Expect = 2e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 20 atgacagaagagagagagcacaacccagcaccagcgaggagaagcctcgcttctgcgagg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgacagaagagagagagcacaacccagcaccagcgaggagaagcctcgcttctgcgagg 60
Query: 80 gccgtgtgctctctgctctcactgtcat 107
||||||||||||||||||||||||||||
Sbjct: 61 gccgtgtgctctctgctctcactgtcat 88
>RF00073;mir-156;AP008215.1/18234552-18234465 39947:Oryza sativa
Japonica Group
Length = 88
Score = 71.9 bits (36), Expect = 2e-12
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 20 atgacagaagagagagagcacaacccagcaccagcgaggagaagcctcgcttctgcgagg 79
|||||||||||||||||||||||||| ||| |||||| || |||||||||| |||
Sbjct: 1 atgacagaagagagagagcacaacccggcagcagcgacgacggcggtcgcttctgccagg 60
Query: 80 gccgtgtgctctctgctctcactgtcat 107
||||||||||||||| ||| |||||||
Sbjct: 61 gccgtgtgctctctgatctatctgtcat 88
>RF00073;mir-156;AASG02007590.1/3624-3708 3988:Ricinus communis
(castor bean)
Length = 85
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgacagaagagagagagcacaaccc 45
|||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagagagcacaaccc 26
