miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54397_sbi-miR156e:pmrd
Length = 123
Score = 244 bits (123), Expect = 1e-65
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1 cgattaggccctgaagagattgacagaagagagcgagcacccggcgcggcggccggcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgattaggccctgaagagattgacagaagagagcgagcacccggcgcggcggccggcatg 60
Query: 61 gagcgcatgccgtccccgccgcgtgctcgcttctctttctgtcagcctctctctcgtcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gagcgcatgccgtccccgccgcgtgctcgcttctctttctgtcagcctctctctcgtcct 120
Query: 121 ggg 123
|||
Sbjct: 121 ggg 123
>54921_zma-miR156k:pmrd
Length = 123
Score = 194 bits (98), Expect = 1e-50
Identities = 113/118 (95%)
Strand = Plus / Plus
Query: 4 ttaggccctgaagagattgacagaagagagcgagcacccggcgcggcggccggcatggag 63
|||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 4 ttaggccccgaagagattgacagaagagagcgagcacctggcgcggcgaccggcatggaa 63
Query: 64 cgcatgccgtccccgccgcgtgctcgcttctctttctgtcagcctctctctcgtcctg 121
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 64 cgcatgccgtccccgccgcgtgctcgcttctctttctgtcagcctctccctcgtcctg 121
>54914_zma-miR156d:pmrd
Length = 119
Score = 89.7 bits (45), Expect = 5e-19
Identities = 87/101 (86%)
Strand = Plus / Plus
Query: 15 agagattgacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtc 74
||||||||||||||||||| |||||| ||||||| || || ||| | | ||||||||
Sbjct: 10 agagattgacagaagagagtgagcacacggcgcgacgaacgacatagcatgtatgccgtc 69
Query: 75 cccgccgcgtgctcgcttctctttctgtcagcctctctctc 115
| |||||||||||| ||||||||||||||||||||| ||||
Sbjct: 70 ctcgccgcgtgctcacttctctttctgtcagcctctttctc 110
>54923_zma-miR156n:pmrd
Length = 84
Score = 63.9 bits (32), Expect = 3e-11
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 21 tgacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtccccgcc 80
||||||||||||| |||||| ||||||| || || ||| | | ||||||||| ||||
Sbjct: 1 tgacagaagagagtgagcacacggcgcgacgaacgacatagcatgtatgccgtcctcgcc 60
Query: 81 gcgtgctcgcttctctttctgtca 104
|||||||| |||||||||||||||
Sbjct: 61 gcgtgctcacttctctttctgtca 84
>48810_osa-miR156j:pmrd
Length = 165
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 74 ccccgccgcgtgctcgcttctctttctgtcagcctctctc 113
|||||||||||||||||| |||||||||||||| ||||||
Sbjct: 97 ccccgccgcgtgctcgctcctctttctgtcagcatctctc 136
>48804_osa-miR156d:pmrd
Length = 129
Score = 63.9 bits (32), Expect = 3e-11
Identities = 83/100 (83%)
Strand = Plus / Plus
Query: 16 gagattgacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtcc 75
|||||||||||||||||| |||||| ||||| | ||||||||| | || ||||||
Sbjct: 15 gagattgacagaagagagtgagcacacggcgtgatggccggcataaaatctatcccgtcc 74
Query: 76 ccgccgcgtgctcgcttctctttctgtcagcctctctctc 115
|||||||||||| || |||||||||||| ||||| ||||
Sbjct: 75 tcgccgcgtgctcactcctctttctgtcaccctctttctc 114
>48808_osa-miR156h:pmrd
Length = 101
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 74 ccccgccgcgtgctcgcttctctttctgtcagcctctc 111
|||||||||||||||||| |||||||||||||| ||||
Sbjct: 64 ccccgccgcgtgctcgctcctctttctgtcagcatctc 101
>54393_sbi-miR156a:pmrd
Length = 84
Score = 56.0 bits (28), Expect = 6e-09
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 21 tgacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtccccgcc 80
||||||||||||| |||||| ||||||| || |||||| | ||| ||||| ||||
Sbjct: 1 tgacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgcc 60
Query: 81 gcgtgctcgcttctctttctgtca 104
|||||||| |||||||||||||||
Sbjct: 61 gcgtgctcacttctctttctgtca 84
>48813_osa-miR156m:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 74 ccccgccgcgtgctcgcttctctttctgtca 104
|||||||||||||||||| ||||||||||||
Sbjct: 56 ccccgccgcgtgctcgctcctctttctgtca 86
>54402_sbi-miR157:pmrd
Length = 86
Score = 52.0 bits (26), Expect = 1e-07
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 20 ttgacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtccccgc 79
|||||||||||||| |||||| ||||||| || |||||| | ||| ||||| |||
Sbjct: 1 ttgacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgc 60
Query: 80 cgcgtgctcgcttctctttctgtcag 105
||||||||| |||||||||| |||||
Sbjct: 61 cgcgtgctcacttctctttcggtcag 86
>54916_zma-miR156f:pmrd
Length = 167
Score = 50.1 bits (25), Expect = 4e-07
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 81 gcgtgctcgcttctctttctgtcagc-ctctctctcgtcct 120
|||||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 127 gcgtgctcacttctctttctgtcagctctctctctcatcct 167
>48806_osa-miR156f:pmrd
Length = 186
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 76 ccgccgcgtgctcgcttctctttctgtcagc 106
|||| |||||||| |||||||||||||||||
Sbjct: 155 ccgctgcgtgctcacttctctttctgtcagc 185
>54917_zma-miR156g:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 gcgtgctcgcttctctttctgtcagc 106
|||||||| |||||||||||||||||
Sbjct: 95 gcgtgctcacttctctttctgtcagc 120
>54398_sbi-miR156f:pmrd
Length = 128
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 gcgtgctcgcttctctttctgtcagc 106
|||||||| |||||||||||||||||
Sbjct: 101 gcgtgctcacttctctttctgtcagc 126
>54918_zma-miR156h:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 9e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 68 tgccgtccccgccgcgtgctcgcttctctttctgtca 104
||||||| | ||||||||||| || ||||||||||||
Sbjct: 61 tgccgtcgcggccgcgtgctcactgctctttctgtca 97
>54400_sbi-miR156h:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 9e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 68 tgccgtccccgccgcgtgctcgcttctctttctgtca 104
||||||| | ||||||||||| || ||||||||||||
Sbjct: 54 tgccgtcgcggccgcgtgctcactgctctttctgtca 90
>48805_osa-miR156e:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 9e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 68 tgccgtccccgccgcgtgctcgcttctctttctgtca 104
||||||| | ||||||||||| || ||||||||||||
Sbjct: 59 tgccgtcgcggccgcgtgctcactgctctttctgtca 95
>48815_osa-miR156o:pmrd
Length = 179
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 gagattgacagaagagagcgagca 39
|||||||||||||||||| |||||
Sbjct: 155 gagattgacagaagagagtgagca 178
>48812_osa-miR156l:pmrd
Length = 156
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 83 gtgctcgcttctctttctgtcagc 106
|||||| |||||||||||||||||
Sbjct: 125 gtgctcacttctctttctgtcagc 148
