miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABXC01006854.1/140253-140338 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 170 bits (86), Expect = 3e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 20 ttgacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtccccgc 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtccccgc 60
Query: 80 cgcgtgctcgcttctctttctgtcag 105
||||||||||||||||||||||||||
Sbjct: 61 cgcgtgctcgcttctctttctgtcag 86
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 60.0 bits (30), Expect = 7e-09
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 20 ttgacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtccccgc 79
|||||||||||||| |||||| ||||||| || |||||| | ||| ||||| |||
Sbjct: 1 ttgacagaagagagtgagcacacggcgcgacgaacggcataatatgtatgtcgtcctcgc 60
Query: 80 cgcgtgctcgcttctctttctgtcag 105
||||||||| ||||||||||||||||
Sbjct: 61 cgcgtgctcacttctctttctgtcag 86
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 74 ccccgccgcgtgctcgcttctctttctgtcag 105
|||||||||||||||||| |||||||||||||
Sbjct: 57 ccccgccgcgtgctcgctcctctttctgtcag 88
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 50.1 bits (25), Expect = 7e-06
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 20 ttgacagaagagagcgagcacccggcgcggcggccggcatggagcgcatgccgtccccgc 79
|||||||||||||| |||||| ||||| | ||||||||| | || |||||| |||
Sbjct: 1 ttgacagaagagagtgagcacacggcgtgatggccggcataaaatctatcccgtcctcgc 60
Query: 80 cgcgtgctcgcttctctttctgtca 104
||||||||| || ||||||||||||
Sbjct: 61 cgcgtgctcactcctctttctgtca 85
